miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7348 3' -51.4 NC_001900.1 + 2092 0.67 0.855193
Target:  5'- gCACGCacaGAAGCUGUCGAAccuGUCg--- -3'
miRNA:   3'- aGUGCGg--CUUUGGCAGCUU---CAGguuc -5'
7348 3' -51.4 NC_001900.1 + 2972 0.68 0.789547
Target:  5'- uUCGCGgCGAAGCCGUUGGua--CGGGg -3'
miRNA:   3'- -AGUGCgGCUUUGGCAGCUucagGUUC- -5'
7348 3' -51.4 NC_001900.1 + 3440 0.69 0.752251
Target:  5'- cCACGCUGGccuGGCCGUggcagaCGAcgaaguuucaggggaAGUCCAAGg -3'
miRNA:   3'- aGUGCGGCU---UUGGCA------GCU---------------UCAGGUUC- -5'
7348 3' -51.4 NC_001900.1 + 4405 0.7 0.682192
Target:  5'- cUguCGCCGAGGCgGUCGAGGUaUggGa -3'
miRNA:   3'- -AguGCGGCUUUGgCAGCUUCAgGuuC- -5'
7348 3' -51.4 NC_001900.1 + 4579 0.67 0.828341
Target:  5'- -aGCGCCGGuacACCGUCGGccuGGagCAGGu -3'
miRNA:   3'- agUGCGGCUu--UGGCAGCU---UCagGUUC- -5'
7348 3' -51.4 NC_001900.1 + 5593 0.69 0.769068
Target:  5'- uUCAccCGCUGGAGCUGUCGGAGcugcgCUggGc -3'
miRNA:   3'- -AGU--GCGGCUUUGGCAGCUUCa----GGuuC- -5'
7348 3' -51.4 NC_001900.1 + 8187 0.69 0.765942
Target:  5'- --uCGCCGAGAaggcguaCGUCGAguggcaggacgugcAGUCCGGGa -3'
miRNA:   3'- aguGCGGCUUUg------GCAGCU--------------UCAGGUUC- -5'
7348 3' -51.4 NC_001900.1 + 8776 0.67 0.846477
Target:  5'- cCGCGCCGA---CGUgaaGGAGUUCGAGg -3'
miRNA:   3'- aGUGCGGCUuugGCAg--CUUCAGGUUC- -5'
7348 3' -51.4 NC_001900.1 + 9608 0.68 0.81799
Target:  5'- gUACGCCGAGAUCGauccucggaucggUCGGccGG-CCAAGg -3'
miRNA:   3'- aGUGCGGCUUUGGC-------------AGCU--UCaGGUUC- -5'
7348 3' -51.4 NC_001900.1 + 10969 0.66 0.894932
Target:  5'- -aACGCCGAGGCaagaCGuacGUCCAGGa -3'
miRNA:   3'- agUGCGGCUUUGgca-GCuu-CAGGUUC- -5'
7348 3' -51.4 NC_001900.1 + 11871 0.66 0.894932
Target:  5'- -gACGCCGAcucGAUCGcCGA-GUCCGc- -3'
miRNA:   3'- agUGCGGCU---UUGGCaGCUuCAGGUuc -5'
7348 3' -51.4 NC_001900.1 + 12187 0.69 0.769068
Target:  5'- --uCGCCGAGGCCGagaagaccUCGAucGUCCAGc -3'
miRNA:   3'- aguGCGGCUUUGGC--------AGCUu-CAGGUUc -5'
7348 3' -51.4 NC_001900.1 + 12743 0.67 0.863664
Target:  5'- uUCGgGCCG-GAUCGUCGcccGUCCGAc -3'
miRNA:   3'- -AGUgCGGCuUUGGCAGCuu-CAGGUUc -5'
7348 3' -51.4 NC_001900.1 + 14230 0.66 0.902063
Target:  5'- gUCGCgGCC-AGGCaCGUCGAuGUCCGc- -3'
miRNA:   3'- -AGUG-CGGcUUUG-GCAGCUuCAGGUuc -5'
7348 3' -51.4 NC_001900.1 + 14683 0.79 0.243481
Target:  5'- aUCACGCUGGAGCCGUgGGAGcCCu-- -3'
miRNA:   3'- -AGUGCGGCUUUGGCAgCUUCaGGuuc -5'
7348 3' -51.4 NC_001900.1 + 15055 0.66 0.887521
Target:  5'- aUACGCCGGccgaacugaaGACCaUCGAccuGUCCGAc -3'
miRNA:   3'- aGUGCGGCU----------UUGGcAGCUu--CAGGUUc -5'
7348 3' -51.4 NC_001900.1 + 15825 0.66 0.894932
Target:  5'- cCGCGCCGugGCUGgugcCGAAGUacgCCAGc -3'
miRNA:   3'- aGUGCGGCuuUGGCa---GCUUCA---GGUUc -5'
7348 3' -51.4 NC_001900.1 + 15829 0.69 0.747993
Target:  5'- ---gGUCGAGGCCGUCaagGAGGUCgAGGa -3'
miRNA:   3'- agugCGGCUUUGGCAG---CUUCAGgUUC- -5'
7348 3' -51.4 NC_001900.1 + 17241 0.74 0.48286
Target:  5'- cUCGC-CCGAGACC-UCGggGUcgCCAAGg -3'
miRNA:   3'- -AGUGcGGCUUUGGcAGCuuCA--GGUUC- -5'
7348 3' -51.4 NC_001900.1 + 17470 0.66 0.901362
Target:  5'- ---gGCCGAAccgccagaagcucACCGagcgUGAGGUCCGGGa -3'
miRNA:   3'- agugCGGCUU-------------UGGCa---GCUUCAGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.