miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7348 3' -51.4 NC_001900.1 + 8187 0.69 0.765942
Target:  5'- --uCGCCGAGAaggcguaCGUCGAguggcaggacgugcAGUCCGGGa -3'
miRNA:   3'- aguGCGGCUUUg------GCAGCU--------------UCAGGUUC- -5'
7348 3' -51.4 NC_001900.1 + 12743 0.67 0.863664
Target:  5'- uUCGgGCCG-GAUCGUCGcccGUCCGAc -3'
miRNA:   3'- -AGUgCGGCuUUGGCAGCuu-CAGGUUc -5'
7348 3' -51.4 NC_001900.1 + 45888 0.66 0.871881
Target:  5'- -gACGCUGAAG-CGUCG-GGUCCGc- -3'
miRNA:   3'- agUGCGGCUUUgGCAGCuUCAGGUuc -5'
7348 3' -51.4 NC_001900.1 + 31517 0.66 0.887521
Target:  5'- uUCACGCCGuAGuuGUCGGcgAGaUCCu-- -3'
miRNA:   3'- -AGUGCGGCuUUggCAGCU--UC-AGGuuc -5'
7348 3' -51.4 NC_001900.1 + 15055 0.66 0.887521
Target:  5'- aUACGCCGGccgaacugaaGACCaUCGAccuGUCCGAc -3'
miRNA:   3'- aGUGCGGCU----------UUGGcAGCUu--CAGGUUc -5'
7348 3' -51.4 NC_001900.1 + 11871 0.66 0.894932
Target:  5'- -gACGCCGAcucGAUCGcCGA-GUCCGc- -3'
miRNA:   3'- agUGCGGCU---UUGGCaGCUuCAGGUuc -5'
7348 3' -51.4 NC_001900.1 + 14230 0.66 0.902063
Target:  5'- gUCGCgGCC-AGGCaCGUCGAuGUCCGc- -3'
miRNA:   3'- -AGUG-CGGcUUUG-GCAGCUuCAGGUuc -5'
7348 3' -51.4 NC_001900.1 + 9608 0.68 0.81799
Target:  5'- gUACGCCGAGAUCGauccucggaucggUCGGccGG-CCAAGg -3'
miRNA:   3'- aGUGCGGCUUUGGC-------------AGCU--UCaGGUUC- -5'
7348 3' -51.4 NC_001900.1 + 12187 0.69 0.769068
Target:  5'- --uCGCCGAGGCCGagaagaccUCGAucGUCCAGc -3'
miRNA:   3'- aguGCGGCUUUGGC--------AGCUu-CAGGUUc -5'
7348 3' -51.4 NC_001900.1 + 5593 0.69 0.769068
Target:  5'- uUCAccCGCUGGAGCUGUCGGAGcugcgCUggGc -3'
miRNA:   3'- -AGU--GCGGCUUUGGCAGCUUCa----GGuuC- -5'
7348 3' -51.4 NC_001900.1 + 28010 0.65 0.906205
Target:  5'- aUCACGCCGuucgggccgguguAACCGggugCGGAG-CCGc- -3'
miRNA:   3'- -AGUGCGGCu------------UUGGCa---GCUUCaGGUuc -5'
7348 3' -51.4 NC_001900.1 + 15829 0.69 0.747993
Target:  5'- ---gGUCGAGGCCGUCaagGAGGUCgAGGa -3'
miRNA:   3'- agugCGGCUUUGGCAG---CUUCAGgUUC- -5'
7348 3' -51.4 NC_001900.1 + 37261 0.69 0.74157
Target:  5'- -gACGCCGAcagGGCCGUCGuacacggcccgcagcGGGgCCAGGa -3'
miRNA:   3'- agUGCGGCU---UUGGCAGC---------------UUCaGGUUC- -5'
7348 3' -51.4 NC_001900.1 + 19545 0.7 0.704457
Target:  5'- aCAcCGCCGugGCCGUgGGAGgaacugcCCAAGg -3'
miRNA:   3'- aGU-GCGGCuuUGGCAgCUUCa------GGUUC- -5'
7348 3' -51.4 NC_001900.1 + 48687 0.71 0.648448
Target:  5'- gUCACGCUGucGCUGUCGucG-CCGGGu -3'
miRNA:   3'- -AGUGCGGCuuUGGCAGCuuCaGGUUC- -5'
7348 3' -51.4 NC_001900.1 + 26257 0.71 0.637153
Target:  5'- cUCGCGCuCG--GCCGgCGggGUCCAc- -3'
miRNA:   3'- -AGUGCG-GCuuUGGCaGCuuCAGGUuc -5'
7348 3' -51.4 NC_001900.1 + 40924 0.71 0.614559
Target:  5'- uUCGCGCCGuagacGCCGUUGAugaucgCCAGGu -3'
miRNA:   3'- -AGUGCGGCuu---UGGCAGCUuca---GGUUC- -5'
7348 3' -51.4 NC_001900.1 + 26884 0.71 0.614559
Target:  5'- gUCGCaacgGCCGGAACCGUCGccGUCg--- -3'
miRNA:   3'- -AGUG----CGGCUUUGGCAGCuuCAGguuc -5'
7348 3' -51.4 NC_001900.1 + 27529 0.73 0.514753
Target:  5'- cUCACGCCGAGGaaGUCGGcGGUCUg-- -3'
miRNA:   3'- -AGUGCGGCUUUggCAGCU-UCAGGuuc -5'
7348 3' -51.4 NC_001900.1 + 37139 1.1 0.001983
Target:  5'- gUCACGCCGAAACCGUCGAAGUCCAAGa -3'
miRNA:   3'- -AGUGCGGCUUUGGCAGCUUCAGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.