miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7353 5' -54.9 NC_001900.1 + 22823 0.66 0.723111
Target:  5'- cGAGCGCGAGaagaaGGCugCGGcgaGUgcCAUCa -3'
miRNA:   3'- -CUCGCGCUUg----UCGugGCC---CAa-GUAGg -5'
7353 5' -54.9 NC_001900.1 + 41204 0.66 0.723111
Target:  5'- cAGCGCGccCAGCACCugcuggugcagcGGGUUgG-CCu -3'
miRNA:   3'- cUCGCGCuuGUCGUGG------------CCCAAgUaGG- -5'
7353 5' -54.9 NC_001900.1 + 29843 0.66 0.723111
Target:  5'- cAGCGCGAGCuGuCAUCaGGUggagGUCCg -3'
miRNA:   3'- cUCGCGCUUGuC-GUGGcCCAag--UAGG- -5'
7353 5' -54.9 NC_001900.1 + 26870 0.66 0.723111
Target:  5'- -uGUGCGAGCAuCGCUcGGUUC-UCCu -3'
miRNA:   3'- cuCGCGCUUGUcGUGGcCCAAGuAGG- -5'
7353 5' -54.9 NC_001900.1 + 29539 0.66 0.716645
Target:  5'- cGAGaCGUGGACuggaucugguaguucAGCGCCGaGUaCGUCCg -3'
miRNA:   3'- -CUC-GCGCUUG---------------UCGUGGCcCAaGUAGG- -5'
7353 5' -54.9 NC_001900.1 + 35905 0.66 0.712317
Target:  5'- cAGcCGCGAucaGGCGCUGGGcgucUCGUCg -3'
miRNA:   3'- cUC-GCGCUug-UCGUGGCCCa---AGUAGg -5'
7353 5' -54.9 NC_001900.1 + 29363 0.66 0.712317
Target:  5'- cGGUGcCGAuCAGCACCGGaccCAUCUc -3'
miRNA:   3'- cUCGC-GCUuGUCGUGGCCcaaGUAGG- -5'
7353 5' -54.9 NC_001900.1 + 29704 0.66 0.712317
Target:  5'- cAGCGCcagguACAgGUACCGGGUaccggaGUCCg -3'
miRNA:   3'- cUCGCGcu---UGU-CGUGGCCCAag----UAGG- -5'
7353 5' -54.9 NC_001900.1 + 28978 0.66 0.712317
Target:  5'- -cGCGCuuGCAGCGCCGcaguuGGaUCuUCCg -3'
miRNA:   3'- cuCGCGcuUGUCGUGGC-----CCaAGuAGG- -5'
7353 5' -54.9 NC_001900.1 + 34037 0.66 0.701441
Target:  5'- -uGCGCuucuuGAcCGGCACCGGG---AUCCg -3'
miRNA:   3'- cuCGCG-----CUuGUCGUGGCCCaagUAGG- -5'
7353 5' -54.9 NC_001900.1 + 40201 0.66 0.690497
Target:  5'- -cGCGCaugucGAACGcCACCGGGUUguUCg -3'
miRNA:   3'- cuCGCG-----CUUGUcGUGGCCCAAguAGg -5'
7353 5' -54.9 NC_001900.1 + 43130 0.66 0.679496
Target:  5'- aGAGCauCGAGCuGCGCuCGGGUgCcgCCu -3'
miRNA:   3'- -CUCGc-GCUUGuCGUG-GCCCAaGuaGG- -5'
7353 5' -54.9 NC_001900.1 + 35830 0.66 0.679496
Target:  5'- -uGUGgGAACAGCuCCGGGaaCA-CCu -3'
miRNA:   3'- cuCGCgCUUGUCGuGGCCCaaGUaGG- -5'
7353 5' -54.9 NC_001900.1 + 17492 0.67 0.668448
Target:  5'- cGAGCGUGA--GGU-CCGGGa-CAUCCg -3'
miRNA:   3'- -CUCGCGCUugUCGuGGCCCaaGUAGG- -5'
7353 5' -54.9 NC_001900.1 + 10653 0.67 0.668448
Target:  5'- -uGCG-GGGCu-CGCCGGGUaCGUCCa -3'
miRNA:   3'- cuCGCgCUUGucGUGGCCCAaGUAGG- -5'
7353 5' -54.9 NC_001900.1 + 40343 0.67 0.661802
Target:  5'- cGAGUGCGAugacucggaacccguGCucGGCgaGCCGGGUcagCAUCUc -3'
miRNA:   3'- -CUCGCGCU---------------UG--UCG--UGGCCCAa--GUAGG- -5'
7353 5' -54.9 NC_001900.1 + 40090 0.67 0.657366
Target:  5'- uGGCGUucaGGACgugcugccgaAGCACCGGGUUgcCGUCg -3'
miRNA:   3'- cUCGCG---CUUG----------UCGUGGCCCAA--GUAGg -5'
7353 5' -54.9 NC_001900.1 + 20545 0.67 0.63514
Target:  5'- -uGCGCGuGCAGCAgCGaGcGUUCGaCCg -3'
miRNA:   3'- cuCGCGCuUGUCGUgGC-C-CAAGUaGG- -5'
7353 5' -54.9 NC_001900.1 + 24856 0.68 0.601805
Target:  5'- uGAGCGUGuuguCAGCcCCGGaGaUCGUCUu -3'
miRNA:   3'- -CUCGCGCuu--GUCGuGGCC-CaAGUAGG- -5'
7353 5' -54.9 NC_001900.1 + 11063 0.68 0.590734
Target:  5'- cGGGCGCGaAACAuGCGCCuGGU--GUCUg -3'
miRNA:   3'- -CUCGCGC-UUGU-CGUGGcCCAagUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.