Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7353 | 5' | -54.9 | NC_001900.1 | + | 39652 | 1.13 | 0.00051 |
Target: 5'- cGAGCGCGAACAGCACCGGGUUCAUCCg -3' miRNA: 3'- -CUCGCGCUUGUCGUGGCCCAAGUAGG- -5' |
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7353 | 5' | -54.9 | NC_001900.1 | + | 42068 | 0.75 | 0.221918 |
Target: 5'- aGGGUGUcagGGGCAGCgACCGGGUggAUCCa -3' miRNA: 3'- -CUCGCG---CUUGUCG-UGGCCCAagUAGG- -5' |
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7353 | 5' | -54.9 | NC_001900.1 | + | 24771 | 0.73 | 0.318292 |
Target: 5'- cGGCGCGGGCGGCAaaGGGggCGacaCCa -3' miRNA: 3'- cUCGCGCUUGUCGUggCCCaaGUa--GG- -5' |
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7353 | 5' | -54.9 | NC_001900.1 | + | 20916 | 0.72 | 0.368316 |
Target: 5'- cGAGacCGCcuucGGCGGCuccuggcucACCGGGUUCGUCCg -3' miRNA: 3'- -CUC--GCGc---UUGUCG---------UGGCCCAAGUAGG- -5' |
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7353 | 5' | -54.9 | NC_001900.1 | + | 39721 | 0.71 | 0.410165 |
Target: 5'- cAGCGCGAugagaucagccgcCAGCuCCGGGUcagccagCAUCCa -3' miRNA: 3'- cUCGCGCUu------------GUCGuGGCCCAa------GUAGG- -5' |
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7353 | 5' | -54.9 | NC_001900.1 | + | 16877 | 0.71 | 0.423476 |
Target: 5'- cAGCGUGGAuCGGCGUCGGGaUCGUCg -3' miRNA: 3'- cUCGCGCUU-GUCGUGGCCCaAGUAGg -5' |
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7353 | 5' | -54.9 | NC_001900.1 | + | 5280 | 0.71 | 0.433141 |
Target: 5'- cAGCGagGAGCGGCccgACCGGGaagUCAUCa -3' miRNA: 3'- cUCGCg-CUUGUCG---UGGCCCa--AGUAGg -5' |
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7353 | 5' | -54.9 | NC_001900.1 | + | 34673 | 0.7 | 0.483295 |
Target: 5'- uGGGCGCGuGCAGgACCGuGUggaaGUCCa -3' miRNA: 3'- -CUCGCGCuUGUCgUGGCcCAag--UAGG- -5' |
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7353 | 5' | -54.9 | NC_001900.1 | + | 31282 | 0.69 | 0.504131 |
Target: 5'- cAGCGUGGGCAGCAUCGGcugaAUCg -3' miRNA: 3'- cUCGCGCUUGUCGUGGCCcaagUAGg -5' |
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7353 | 5' | -54.9 | NC_001900.1 | + | 32790 | 0.69 | 0.525346 |
Target: 5'- --cCGCGAGCGcGUACCGGuccUCAUCCc -3' miRNA: 3'- cucGCGCUUGU-CGUGGCCca-AGUAGG- -5' |
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7353 | 5' | -54.9 | NC_001900.1 | + | 37772 | 0.69 | 0.53608 |
Target: 5'- aGAGCGCGuuccuguGCGGCcuuuCCGGGccagUUC-UCCa -3' miRNA: 3'- -CUCGCGCu------UGUCGu---GGCCC----AAGuAGG- -5' |
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7353 | 5' | -54.9 | NC_001900.1 | + | 46073 | 0.69 | 0.54689 |
Target: 5'- cAGUGCGGAgAGCAUCuGGUUgAUCg -3' miRNA: 3'- cUCGCGCUUgUCGUGGcCCAAgUAGg -5' |
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7353 | 5' | -54.9 | NC_001900.1 | + | 45091 | 0.68 | 0.568707 |
Target: 5'- --aCGCGAGCAGCAgggugacaacCUGGGaaggaUCGUCCu -3' miRNA: 3'- cucGCGCUUGUCGU----------GGCCCa----AGUAGG- -5' |
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7353 | 5' | -54.9 | NC_001900.1 | + | 26261 | 0.68 | 0.587419 |
Target: 5'- uGAGCGCGuccaugaucgcaucGACAGCACCGGuagcggUGUCg -3' miRNA: 3'- -CUCGCGC--------------UUGUCGUGGCCcaa---GUAGg -5' |
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7353 | 5' | -54.9 | NC_001900.1 | + | 11063 | 0.68 | 0.590734 |
Target: 5'- cGGGCGCGaAACAuGCGCCuGGU--GUCUg -3' miRNA: 3'- -CUCGCGC-UUGU-CGUGGcCCAagUAGG- -5' |
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7353 | 5' | -54.9 | NC_001900.1 | + | 24856 | 0.68 | 0.601805 |
Target: 5'- uGAGCGUGuuguCAGCcCCGGaGaUCGUCUu -3' miRNA: 3'- -CUCGCGCuu--GUCGuGGCC-CaAGUAGG- -5' |
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7353 | 5' | -54.9 | NC_001900.1 | + | 20545 | 0.67 | 0.63514 |
Target: 5'- -uGCGCGuGCAGCAgCGaGcGUUCGaCCg -3' miRNA: 3'- cuCGCGCuUGUCGUgGC-C-CAAGUaGG- -5' |
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7353 | 5' | -54.9 | NC_001900.1 | + | 40090 | 0.67 | 0.657366 |
Target: 5'- uGGCGUucaGGACgugcugccgaAGCACCGGGUUgcCGUCg -3' miRNA: 3'- cUCGCG---CUUG----------UCGUGGCCCAA--GUAGg -5' |
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7353 | 5' | -54.9 | NC_001900.1 | + | 40343 | 0.67 | 0.661802 |
Target: 5'- cGAGUGCGAugacucggaacccguGCucGGCgaGCCGGGUcagCAUCUc -3' miRNA: 3'- -CUCGCGCU---------------UG--UCG--UGGCCCAa--GUAGG- -5' |
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7353 | 5' | -54.9 | NC_001900.1 | + | 17492 | 0.67 | 0.668448 |
Target: 5'- cGAGCGUGA--GGU-CCGGGa-CAUCCg -3' miRNA: 3'- -CUCGCGCUugUCGuGGCCCaaGUAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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