miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
757 3' -44 NC_000852.3 + 130819 0.66 1
Target:  5'- aAAGCAGA--UGAuGACGAAUggaAAACCa -3'
miRNA:   3'- gUUUGUCUcuGCUuCUGCUUG---UUUGG- -5'
757 3' -44 NC_000852.3 + 221400 0.67 1
Target:  5'- aAAAguGAuuuGGCGAu--CGAACAGGCCg -3'
miRNA:   3'- gUUUguCU---CUGCUucuGCUUGUUUGG- -5'
757 3' -44 NC_000852.3 + 165648 0.67 1
Target:  5'- cUAAACGGGGAaacgacaccaacCGggGuCGAACcgguGACCu -3'
miRNA:   3'- -GUUUGUCUCU------------GCuuCuGCUUGu---UUGG- -5'
757 3' -44 NC_000852.3 + 24300 0.67 1
Target:  5'- ---gUAGaAGACGuugGAGACG-ACGAACCu -3'
miRNA:   3'- guuuGUC-UCUGC---UUCUGCuUGUUUGG- -5'
757 3' -44 NC_000852.3 + 307651 0.69 1
Target:  5'- uGAACAGAacCGAGaACGAuCAGACCa -3'
miRNA:   3'- gUUUGUCUcuGCUUcUGCUuGUUUGG- -5'
757 3' -44 NC_000852.3 + 81745 0.69 1
Target:  5'- --uGCAGGGGCGuccAAGACGAcagcGCGggUCu -3'
miRNA:   3'- guuUGUCUCUGC---UUCUGCU----UGUuuGG- -5'
757 3' -44 NC_000852.3 + 276239 0.69 1
Target:  5'- -uAugGGGGAUGAAuGugGAAUuuGCCu -3'
miRNA:   3'- guUugUCUCUGCUU-CugCUUGuuUGG- -5'
757 3' -44 NC_000852.3 + 170780 0.7 1
Target:  5'- -cAAUAGAGAUGu-GACGAAUaccguGAACCu -3'
miRNA:   3'- guUUGUCUCUGCuuCUGCUUG-----UUUGG- -5'
757 3' -44 NC_000852.3 + 128595 0.7 1
Target:  5'- aGAAgAGAGACGugaccGACGAcgACAuACCc -3'
miRNA:   3'- gUUUgUCUCUGCuu---CUGCU--UGUuUGG- -5'
757 3' -44 NC_000852.3 + 111025 0.67 1
Target:  5'- aAAACAGcGAUGuauuuGGGCGAGCGAGa- -3'
miRNA:   3'- gUUUGUCuCUGCu----UCUGCUUGUUUgg -5'
757 3' -44 NC_000852.3 + 79956 0.67 1
Target:  5'- uGAAUcGAGACGuuugccccgcaagaAAGACGAGCAcGCg -3'
miRNA:   3'- gUUUGuCUCUGC--------------UUCUGCUUGUuUGg -5'
757 3' -44 NC_000852.3 + 57994 0.67 1
Target:  5'- ---cCGGGGGCGGAaaAUGAGCGAACUc -3'
miRNA:   3'- guuuGUCUCUGCUUc-UGCUUGUUUGG- -5'
757 3' -44 NC_000852.3 + 132449 0.66 1
Target:  5'- aAAugAGAGACGcAGGAgGGucguGgGGGCCg -3'
miRNA:   3'- gUUugUCUCUGC-UUCUgCU----UgUUUGG- -5'
757 3' -44 NC_000852.3 + 61138 0.66 1
Target:  5'- --cGCGGGuuuucgcucGACGuauGACGAACAaGACCa -3'
miRNA:   3'- guuUGUCU---------CUGCuu-CUGCUUGU-UUGG- -5'
757 3' -44 NC_000852.3 + 1818 0.66 1
Target:  5'- -uAGCGGAG-CGuagGGGCGcgcguGACAAGCCc -3'
miRNA:   3'- guUUGUCUCuGCu--UCUGC-----UUGUUUGG- -5'
757 3' -44 NC_000852.3 + 71241 0.66 1
Target:  5'- uCGAACAGAGAauGAGA-GAGCAucuGCg -3'
miRNA:   3'- -GUUUGUCUCUgcUUCUgCUUGUu--UGg -5'
757 3' -44 NC_000852.3 + 209451 0.67 1
Target:  5'- -uAACAGAGcauACGAAcGACGAGgGAaaaauACCu -3'
miRNA:   3'- guUUGUCUC---UGCUU-CUGCUUgUU-----UGG- -5'
757 3' -44 NC_000852.3 + 200499 0.67 1
Target:  5'- aGAGCucauucGAGACGuuuGACGAACuuguCCg -3'
miRNA:   3'- gUUUGu-----CUCUGCuu-CUGCUUGuuu-GG- -5'
757 3' -44 NC_000852.3 + 272478 0.67 1
Target:  5'- gCAAACcgaaAGAGGCGAGcGACaucaaGAACAAgaaauGCCa -3'
miRNA:   3'- -GUUUG----UCUCUGCUU-CUG-----CUUGUU-----UGG- -5'
757 3' -44 NC_000852.3 + 161820 0.67 1
Target:  5'- aGAAgAGucuuGGCGGAGACGAu---ACCa -3'
miRNA:   3'- gUUUgUCu---CUGCUUCUGCUuguuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.