miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
757 3' -44 NC_000852.3 + 74916 0.67 1
Target:  5'- cCAAACAcGGGAUGAAGGuCG-GCGAAUg -3'
miRNA:   3'- -GUUUGU-CUCUGCUUCU-GCuUGUUUGg -5'
757 3' -44 NC_000852.3 + 166424 0.67 1
Target:  5'- uUAAACGGAGccaAUGuGGuCGAACAAGCg -3'
miRNA:   3'- -GUUUGUCUC---UGCuUCuGCUUGUUUGg -5'
757 3' -44 NC_000852.3 + 320055 0.67 1
Target:  5'- cCGAACGGGGGUGGu-GCGAucgGCAAGCCc -3'
miRNA:   3'- -GUUUGUCUCUGCUucUGCU---UGUUUGG- -5'
757 3' -44 NC_000852.3 + 152374 0.67 1
Target:  5'- -uGAUAGGGACGAcuACGAugAGAg- -3'
miRNA:   3'- guUUGUCUCUGCUucUGCUugUUUgg -5'
757 3' -44 NC_000852.3 + 161687 0.67 1
Target:  5'- aGGACAucaaccuugucguuGAGGaacuCGAGGgcuGCGGACAGACCa -3'
miRNA:   3'- gUUUGU--------------CUCU----GCUUC---UGCUUGUUUGG- -5'
757 3' -44 NC_000852.3 + 18595 0.66 1
Target:  5'- -cAACAGAGAuCGAAuuuGCGAAUAAAUUu -3'
miRNA:   3'- guUUGUCUCU-GCUUc--UGCUUGUUUGG- -5'
757 3' -44 NC_000852.3 + 328926 0.66 1
Target:  5'- -uAGCGGAG-CGuagGGGCGcgcguGACAAGCCc -3'
miRNA:   3'- guUUGUCUCuGCu--UCUGC-----UUGUUUGG- -5'
757 3' -44 NC_000852.3 + 196398 0.66 1
Target:  5'- -cAGCAGAGgauguuccagauuACGAAGACGA-CGAGg- -3'
miRNA:   3'- guUUGUCUC-------------UGCUUCUGCUuGUUUgg -5'
757 3' -44 NC_000852.3 + 85884 0.66 1
Target:  5'- aUAAAcCAGGGuucaugaAUGAAGAUG-GCGAACCa -3'
miRNA:   3'- -GUUU-GUCUC-------UGCUUCUGCuUGUUUGG- -5'
757 3' -44 NC_000852.3 + 68748 0.67 1
Target:  5'- aCGAAU-GuGACGAGGcACGGACGAAUUu -3'
miRNA:   3'- -GUUUGuCuCUGCUUC-UGCUUGUUUGG- -5'
757 3' -44 NC_000852.3 + 246037 0.67 1
Target:  5'- aCAAAacggaGGAGACuGAGGCGAAUGuaaucGCCa -3'
miRNA:   3'- -GUUUg----UCUCUGcUUCUGCUUGUu----UGG- -5'
757 3' -44 NC_000852.3 + 302885 0.68 1
Target:  5'- aCGGACAGA----AAGACGAACAagGACUg -3'
miRNA:   3'- -GUUUGUCUcugcUUCUGCUUGU--UUGG- -5'
757 3' -44 NC_000852.3 + 182406 0.68 1
Target:  5'- ---uUAGAGuuCGAAaaACGAACGAACCa -3'
miRNA:   3'- guuuGUCUCu-GCUUc-UGCUUGUUUGG- -5'
757 3' -44 NC_000852.3 + 190457 0.68 1
Target:  5'- --uGCAGAGAagcuauccAGGCGAACAGAUg -3'
miRNA:   3'- guuUGUCUCUgcu-----UCUGCUUGUUUGg -5'
757 3' -44 NC_000852.3 + 98588 0.68 1
Target:  5'- cCAuACGuGAGucCGAcGACGAGCGAACg -3'
miRNA:   3'- -GUuUGU-CUCu-GCUuCUGCUUGUUUGg -5'
757 3' -44 NC_000852.3 + 190694 0.68 1
Target:  5'- gGAAaAGGGAUGAugacucuGAUGAugAAGCCg -3'
miRNA:   3'- gUUUgUCUCUGCUu------CUGCUugUUUGG- -5'
757 3' -44 NC_000852.3 + 40408 0.68 1
Target:  5'- gAAACGuuGACu-AGACGAGCGAGCa -3'
miRNA:   3'- gUUUGUcuCUGcuUCUGCUUGUUUGg -5'
757 3' -44 NC_000852.3 + 113952 0.69 1
Target:  5'- -----cGGGACGAAGAUGGcCAuAGCCa -3'
miRNA:   3'- guuuguCUCUGCUUCUGCUuGU-UUGG- -5'
757 3' -44 NC_000852.3 + 115626 0.69 1
Target:  5'- --uGCAGGuauGACGAAGACGGA---ACCc -3'
miRNA:   3'- guuUGUCU---CUGCUUCUGCUUguuUGG- -5'
757 3' -44 NC_000852.3 + 128595 0.7 1
Target:  5'- aGAAgAGAGACGugaccGACGAcgACAuACCc -3'
miRNA:   3'- gUUUgUCUCUGCuu---CUGCU--UGUuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.