miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7633 3' -61.6 NC_001973.1 + 24124 0.66 0.699929
Target:  5'- gAGCcgggCGAGCUC-GCGGGUGCGc---- -3'
miRNA:   3'- -UCGa---GCUCGAGcCGCCCGCGCauccu -5'
7633 3' -61.6 NC_001973.1 + 56409 0.66 0.699929
Target:  5'- aAGC-CGAGCUCGGUaucGGGCuCG-GGGc -3'
miRNA:   3'- -UCGaGCUCGAGCCG---CCCGcGCaUCCu -5'
7633 3' -61.6 NC_001973.1 + 32076 0.66 0.690246
Target:  5'- cAGCccagCGAGaa-GGUGGGCGCGggcAGGu -3'
miRNA:   3'- -UCGa---GCUCgagCCGCCCGCGCa--UCCu -5'
7633 3' -61.6 NC_001973.1 + 95961 0.66 0.690246
Target:  5'- cGCUuucgaCGAGa-CGGCGGGCGCGcUGGu- -3'
miRNA:   3'- uCGA-----GCUCgaGCCGCCCGCGC-AUCcu -5'
7633 3' -61.6 NC_001973.1 + 106956 0.66 0.690246
Target:  5'- cAGCgcgccgggCGcGCUCGGCGuGcGCGCGcugcagAGGAa -3'
miRNA:   3'- -UCGa-------GCuCGAGCCGC-C-CGCGCa-----UCCU- -5'
7633 3' -61.6 NC_001973.1 + 30386 0.66 0.690246
Target:  5'- gGGUgCGGGC-CGGCGcGGCggcgGCGgcGGAg -3'
miRNA:   3'- -UCGaGCUCGaGCCGC-CCG----CGCauCCU- -5'
7633 3' -61.6 NC_001973.1 + 152385 0.66 0.670755
Target:  5'- cGGC-CGGcGCg-GGCGGGCGCG-GGGc -3'
miRNA:   3'- -UCGaGCU-CGagCCGCCCGCGCaUCCu -5'
7633 3' -61.6 NC_001973.1 + 56558 0.66 0.670755
Target:  5'- gAGCUCGAuaUCGGgcucuaugaCGGGCGCGg---- -3'
miRNA:   3'- -UCGAGCUcgAGCC---------GCCCGCGCauccu -5'
7633 3' -61.6 NC_001973.1 + 110351 0.66 0.660963
Target:  5'- cGUUCGccGcCUCGGCGGcCGCGUcGGAc -3'
miRNA:   3'- uCGAGCu-C-GAGCCGCCcGCGCAuCCU- -5'
7633 3' -61.6 NC_001973.1 + 60399 0.66 0.660963
Target:  5'- cGCUCGAGgagcugauCUUGcaGCGGGCGCGcucgcuGGAu -3'
miRNA:   3'- uCGAGCUC--------GAGC--CGCCCGCGCau----CCU- -5'
7633 3' -61.6 NC_001973.1 + 53848 0.67 0.64132
Target:  5'- gAGCUCGccccGGCggCGGCGGcgccgccgaGCGCGgcGGc -3'
miRNA:   3'- -UCGAGC----UCGa-GCCGCC---------CGCGCauCCu -5'
7633 3' -61.6 NC_001973.1 + 144753 0.67 0.611823
Target:  5'- cGGC-CGAGga-GGCGGcGCGCG-AGGAc -3'
miRNA:   3'- -UCGaGCUCgagCCGCC-CGCGCaUCCU- -5'
7633 3' -61.6 NC_001973.1 + 106677 0.67 0.610841
Target:  5'- cGCUCGAcgaucucgacgucGCuUUGGCGGGCGCGc---- -3'
miRNA:   3'- uCGAGCU-------------CG-AGCCGCCCGCGCauccu -5'
7633 3' -61.6 NC_001973.1 + 146073 0.68 0.582452
Target:  5'- cGC-CGAGC-CGGCucGGGCGgGcgGGGAc -3'
miRNA:   3'- uCGaGCUCGaGCCG--CCCGCgCa-UCCU- -5'
7633 3' -61.6 NC_001973.1 + 29975 0.68 0.57272
Target:  5'- cGGCUCGG---UGGUGGGCGCGUAu-- -3'
miRNA:   3'- -UCGAGCUcgaGCCGCCCGCGCAUccu -5'
7633 3' -61.6 NC_001973.1 + 57133 0.68 0.57272
Target:  5'- cAGCUCGcAGUUgGGCGauuGCGCGUcgagaaGGGAc -3'
miRNA:   3'- -UCGAGC-UCGAgCCGCc--CGCGCA------UCCU- -5'
7633 3' -61.6 NC_001973.1 + 83808 0.68 0.57272
Target:  5'- cGgaCGAGCUgGGCcGcGCGCGgcGGAg -3'
miRNA:   3'- uCgaGCUCGAgCCGcC-CGCGCauCCU- -5'
7633 3' -61.6 NC_001973.1 + 95840 0.68 0.57272
Target:  5'- cGGCgaCGGGCcCGGUgccGGGCaCGUGGGAg -3'
miRNA:   3'- -UCGa-GCUCGaGCCG---CCCGcGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 41114 0.68 0.566898
Target:  5'- gAGCUCGAGUuuggucauuuaguugUCGGCGGcG-GCGgcGGu -3'
miRNA:   3'- -UCGAGCUCG---------------AGCCGCC-CgCGCauCCu -5'
7633 3' -61.6 NC_001973.1 + 7260 0.68 0.563026
Target:  5'- uGCgcagCGGGCUCGGCGcgcGGCGCGc---- -3'
miRNA:   3'- uCGa---GCUCGAGCCGC---CCGCGCauccu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.