miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7634 5' -53.9 NC_001973.1 + 9084 0.66 0.967294
Target:  5'- uGUCGcGCC---GCgUGAGCUCGGCGc -3'
miRNA:   3'- gUAGUaCGGguuUGaGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 41105 0.66 0.965362
Target:  5'- gCGUCcg--CCGAGCUCGAGUuuggucauuuaguugUCGGCGg -3'
miRNA:   3'- -GUAGuacgGGUUUGAGCUCG---------------AGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 129116 0.66 0.965362
Target:  5'- uCAUCG-GUCgCAGuACUucccugcgacuugaaCGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUaCGG-GUU-UGA---------------GCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 59983 0.66 0.964031
Target:  5'- --cCggGCCCAGAC-CGcGGC-CGGCGa -3'
miRNA:   3'- guaGuaCGGGUUUGaGC-UCGaGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 57792 0.66 0.964031
Target:  5'- --cCGUG-CCGAACUCGcAGCUCccgcucauuuuGGCGa -3'
miRNA:   3'- guaGUACgGGUUUGAGC-UCGAG-----------CCGC- -5'
7634 5' -53.9 NC_001973.1 + 120363 0.66 0.964031
Target:  5'- gAUCuggcgGCCaAGACggCGAGUUUGGCGg -3'
miRNA:   3'- gUAGua---CGGgUUUGa-GCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 142499 0.66 0.964031
Target:  5'- gAUCAUGCgCAuACUCGAGCgcaacuUCGaCGu -3'
miRNA:   3'- gUAGUACGgGUuUGAGCUCG------AGCcGC- -5'
7634 5' -53.9 NC_001973.1 + 132191 0.66 0.960546
Target:  5'- uCGUCGcUGUCCAuuUUCGGucucCUCGGCGg -3'
miRNA:   3'- -GUAGU-ACGGGUuuGAGCUc---GAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 51454 0.66 0.960546
Target:  5'- gCcgCGaGCCCGGg--CGAGCUCGaGCGg -3'
miRNA:   3'- -GuaGUaCGGGUUugaGCUCGAGC-CGC- -5'
7634 5' -53.9 NC_001973.1 + 132539 0.66 0.960546
Target:  5'- -----cGCCgggcgcggcggCGGGCUCGAGCgCGGCGg -3'
miRNA:   3'- guaguaCGG-----------GUUUGAGCUCGaGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 7248 0.66 0.960546
Target:  5'- cCGUCGaGCagauGCgcagCGGGCUCGGCGc -3'
miRNA:   3'- -GUAGUaCGgguuUGa---GCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 123855 0.66 0.956835
Target:  5'- --aCGUGCCCAccgaCGAGCaCGGCa -3'
miRNA:   3'- guaGUACGGGUuugaGCUCGaGCCGc -5'
7634 5' -53.9 NC_001973.1 + 95748 0.66 0.952893
Target:  5'- -----cGCCCGccGACaagaUCGuGCUCGGCGu -3'
miRNA:   3'- guaguaCGGGU--UUG----AGCuCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 87568 0.66 0.952893
Target:  5'- gGUUccGCCCcacGAACggguagUCGAGCUCGGUc -3'
miRNA:   3'- gUAGuaCGGG---UUUG------AGCUCGAGCCGc -5'
7634 5' -53.9 NC_001973.1 + 7182 0.66 0.952893
Target:  5'- uCGUCAUGUCCAcgggCGGGUUCGuGCc -3'
miRNA:   3'- -GUAGUACGGGUuugaGCUCGAGC-CGc -5'
7634 5' -53.9 NC_001973.1 + 123212 0.66 0.948715
Target:  5'- uCGUCGUcgGUCCAuuGgUCGuccGGCUCGGCGu -3'
miRNA:   3'- -GUAGUA--CGGGUu-UgAGC---UCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 5432 0.66 0.948715
Target:  5'- gAUCGcGUCCAAggaGC-CGAGCUCGGgCa -3'
miRNA:   3'- gUAGUaCGGGUU---UGaGCUCGAGCC-Gc -5'
7634 5' -53.9 NC_001973.1 + 83791 0.67 0.944299
Target:  5'- gGUCGcgGCCCGGcACUCGgacgAGCUgGGCc -3'
miRNA:   3'- gUAGUa-CGGGUU-UGAGC----UCGAgCCGc -5'
7634 5' -53.9 NC_001973.1 + 46107 0.67 0.944299
Target:  5'- gCcgCGUGCCCGcGCUgGAcGCgCGGCu -3'
miRNA:   3'- -GuaGUACGGGUuUGAgCU-CGaGCCGc -5'
7634 5' -53.9 NC_001973.1 + 45624 0.67 0.944299
Target:  5'- gAUCAgGUCCAcGCgcucgUCGAGCgCGGCGu -3'
miRNA:   3'- gUAGUaCGGGUuUG-----AGCUCGaGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.