miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7639 5' -63.3 NC_001973.1 + 94901 0.66 0.645666
Target:  5'- cGUC-CCGCCgagCCGaCCGgcaaggugGUgGCCGCc -3'
miRNA:   3'- -CGGaGGCGGa--GGC-GGCaa------CGgCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 134381 0.66 0.636024
Target:  5'- gGCCgauuauUCCGCCUCCuuaucgagagcgGCCG--GCCGgCGUu -3'
miRNA:   3'- -CGG------AGGCGGAGG------------CGGCaaCGGCgGCG- -5'
7639 5' -63.3 NC_001973.1 + 8605 0.66 0.62638
Target:  5'- aGCCggCgGCCgcgCCGCgGacgacGCCGCCGa -3'
miRNA:   3'- -CGGa-GgCGGa--GGCGgCaa---CGGCGGCg -5'
7639 5' -63.3 NC_001973.1 + 25582 0.66 0.61674
Target:  5'- cCCUCCuCCUCCucggcgcccaGCCuGUUcGCCGCCa- -3'
miRNA:   3'- cGGAGGcGGAGG----------CGG-CAA-CGGCGGcg -5'
7639 5' -63.3 NC_001973.1 + 6431 0.66 0.61674
Target:  5'- cGCCgacgagCgCGCCcgUCGCCGgaGCCGUgcuCGCg -3'
miRNA:   3'- -CGGa-----G-GCGGa-GGCGGCaaCGGCG---GCG- -5'
7639 5' -63.3 NC_001973.1 + 103963 0.66 0.61674
Target:  5'- cGCCagCaGCCUa-GCCGgggcgUGCCGuuGCg -3'
miRNA:   3'- -CGGagG-CGGAggCGGCa----ACGGCggCG- -5'
7639 5' -63.3 NC_001973.1 + 86041 0.66 0.61674
Target:  5'- uCCUCgGCCUUCcguuuGCCGagGCuCGCgGCg -3'
miRNA:   3'- cGGAGgCGGAGG-----CGGCaaCG-GCGgCG- -5'
7639 5' -63.3 NC_001973.1 + 23233 0.66 0.607109
Target:  5'- gGCCUggcgCUGCUgagCGCCGcgUGUCGCUGCc -3'
miRNA:   3'- -CGGA----GGCGGag-GCGGCa-ACGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 79643 0.66 0.597496
Target:  5'- cGCCgggUCGUCgUCGUCGUcGCUGUCGCu -3'
miRNA:   3'- -CGGa--GGCGGaGGCGGCAaCGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 109136 0.66 0.597496
Target:  5'- gGCCUcuugggcgCCGCCUCgacgaGCCGggcgagccgGUCGcCCGCg -3'
miRNA:   3'- -CGGA--------GGCGGAGg----CGGCaa-------CGGC-GGCG- -5'
7639 5' -63.3 NC_001973.1 + 9918 0.66 0.587905
Target:  5'- cGCgUUCGugaCCUgCCGCgggaaGUUGcCCGCCGCg -3'
miRNA:   3'- -CGgAGGC---GGA-GGCGg----CAAC-GGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 124496 0.67 0.578343
Target:  5'- ---cCCGCgCUCUGCCGgcgcugGCCGaCGCg -3'
miRNA:   3'- cggaGGCG-GAGGCGGCaa----CGGCgGCG- -5'
7639 5' -63.3 NC_001973.1 + 88143 0.67 0.578343
Target:  5'- cGCCcUCGUCggCgGCCGacGCCGCCGa -3'
miRNA:   3'- -CGGaGGCGGa-GgCGGCaaCGGCGGCg -5'
7639 5' -63.3 NC_001973.1 + 92001 0.67 0.568815
Target:  5'- cGCUUCCGCCagcUUgGCCGcaaucGCCuGUCGCu -3'
miRNA:   3'- -CGGAGGCGG---AGgCGGCaa---CGG-CGGCG- -5'
7639 5' -63.3 NC_001973.1 + 32801 0.67 0.568815
Target:  5'- cGCCgCCGCCUCCGUCcaaauaUUGCaguugGCUGUu -3'
miRNA:   3'- -CGGaGGCGGAGGCGGc-----AACGg----CGGCG- -5'
7639 5' -63.3 NC_001973.1 + 72831 0.67 0.559326
Target:  5'- gGCCggcggCCGCCgcgcagUCCGauggaCCGUcGCCGCCucGCg -3'
miRNA:   3'- -CGGa----GGCGG------AGGC-----GGCAaCGGCGG--CG- -5'
7639 5' -63.3 NC_001973.1 + 31347 0.67 0.559326
Target:  5'- gGCgC-CCGCgCUCUG-CGUgGUCGCCGCg -3'
miRNA:   3'- -CG-GaGGCG-GAGGCgGCAaCGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 14655 0.67 0.559326
Target:  5'- aGCCaccggCCGCUcgUCCGCCc--GCCGCC-Cg -3'
miRNA:   3'- -CGGa----GGCGG--AGGCGGcaaCGGCGGcG- -5'
7639 5' -63.3 NC_001973.1 + 74725 0.67 0.559326
Target:  5'- aGCgCUCCccgugcggGCaCUCCacaucgagccaGCCGUcGUCGCCGCg -3'
miRNA:   3'- -CG-GAGG--------CG-GAGG-----------CGGCAaCGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 53387 0.67 0.549882
Target:  5'- cGCCcgCCGCCUCCucgcccGCCGgcacggGCggagCGCCGg -3'
miRNA:   3'- -CGGa-GGCGGAGG------CGGCaa----CG----GCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.