miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7640 3' -49.6 NC_001973.1 + 44790 0.65 0.998735
Target:  5'- uGGCGUcgaacucGUCGAuCGGCGUGUccagacugaugcaaUCGACGc -3'
miRNA:   3'- gCCGCG-------UAGCU-GUCGUAUA--------------AGUUGCu -5'
7640 3' -49.6 NC_001973.1 + 135864 0.66 0.998581
Target:  5'- gGuGUGCGUCGGguGCGUGUgccCGAcCGAc -3'
miRNA:   3'- gC-CGCGUAGCUguCGUAUAa--GUU-GCU- -5'
7640 3' -49.6 NC_001973.1 + 25841 0.66 0.998581
Target:  5'- uCGGCGCA-CGGCGcGCAgcacaCGACGu -3'
miRNA:   3'- -GCCGCGUaGCUGU-CGUauaa-GUUGCu -5'
7640 3' -49.6 NC_001973.1 + 58290 0.66 0.998554
Target:  5'- -aGUGCAUCGACcaugucaAGCAgaauUUCGACGc -3'
miRNA:   3'- gcCGCGUAGCUG-------UCGUau--AAGUUGCu -5'
7640 3' -49.6 NC_001973.1 + 36576 0.66 0.99829
Target:  5'- gGGCGCGUUGACGcGCGcgcugcacuacaUGggCGACGu -3'
miRNA:   3'- gCCGCGUAGCUGU-CGU------------AUaaGUUGCu -5'
7640 3' -49.6 NC_001973.1 + 121665 0.66 0.998193
Target:  5'- gGGCGCGUCGcucGCGGCGcccggAUaccgguacgcgagcUCGGCGGc -3'
miRNA:   3'- gCCGCGUAGC---UGUCGUa----UA--------------AGUUGCU- -5'
7640 3' -49.6 NC_001973.1 + 133956 0.66 0.997949
Target:  5'- gGGCGUAcUCGACGGCcgucucCGACGu -3'
miRNA:   3'- gCCGCGU-AGCUGUCGuauaa-GUUGCu -5'
7640 3' -49.6 NC_001973.1 + 54984 0.66 0.997949
Target:  5'- aGGCgGCggCGGCGGCAUuucgcUCAGCu- -3'
miRNA:   3'- gCCG-CGuaGCUGUCGUAua---AGUUGcu -5'
7640 3' -49.6 NC_001973.1 + 45885 0.66 0.997949
Target:  5'- gCGGCGCugcucGUCGACuucgagacGGCAccgacgUGUUCGACa- -3'
miRNA:   3'- -GCCGCG-----UAGCUG--------UCGU------AUAAGUUGcu -5'
7640 3' -49.6 NC_001973.1 + 8173 0.66 0.997595
Target:  5'- uCGGCGgGUCGACGGacgagcgcgcCGACGGc -3'
miRNA:   3'- -GCCGCgUAGCUGUCguauaa----GUUGCU- -5'
7640 3' -49.6 NC_001973.1 + 121013 0.66 0.997553
Target:  5'- gGGCGCGUUGGCGGCcaagUCcuGCa- -3'
miRNA:   3'- gCCGCGUAGCUGUCGuauaAGu-UGcu -5'
7640 3' -49.6 NC_001973.1 + 96942 0.66 0.997553
Target:  5'- ---gGCAUCGACgAGCc-GUUCGACGAc -3'
miRNA:   3'- gccgCGUAGCUG-UCGuaUAAGUUGCU- -5'
7640 3' -49.6 NC_001973.1 + 81047 0.66 0.997553
Target:  5'- gGGcCGCGUCGACGgGCGUGcgcUUCAGu-- -3'
miRNA:   3'- gCC-GCGUAGCUGU-CGUAU---AAGUUgcu -5'
7640 3' -49.6 NC_001973.1 + 17545 0.66 0.99751
Target:  5'- gCGGcCGCGUUGACcgucaacAGCGUGcaCAugGAa -3'
miRNA:   3'- -GCC-GCGUAGCUG-------UCGUAUaaGUugCU- -5'
7640 3' -49.6 NC_001973.1 + 96761 0.66 0.997095
Target:  5'- cCGGCGaGUCgGGCGGCGUGgcggcCAACGc -3'
miRNA:   3'- -GCCGCgUAG-CUGUCGUAUaa---GUUGCu -5'
7640 3' -49.6 NC_001973.1 + 95979 0.66 0.997095
Target:  5'- gGGCGCGcugguguccuUCGACAGCGccgaaucgaUAcUCGACa- -3'
miRNA:   3'- gCCGCGU----------AGCUGUCGU---------AUaAGUUGcu -5'
7640 3' -49.6 NC_001973.1 + 111933 0.66 0.997095
Target:  5'- uGGUGCG-CGGCGGCGacUUCucCGAc -3'
miRNA:   3'- gCCGCGUaGCUGUCGUauAAGuuGCU- -5'
7640 3' -49.6 NC_001973.1 + 97873 0.66 0.997095
Target:  5'- gGGC-CGUCGugGGCGUAgcagUCGcccuucaugcacACGAa -3'
miRNA:   3'- gCCGcGUAGCugUCGUAUa---AGU------------UGCU- -5'
7640 3' -49.6 NC_001973.1 + 96580 0.66 0.997095
Target:  5'- -uGCGCGguggCGGCGGCGcuggCGACGAc -3'
miRNA:   3'- gcCGCGUa---GCUGUCGUauaaGUUGCU- -5'
7640 3' -49.6 NC_001973.1 + 95034 0.66 0.997095
Target:  5'- gCGGCGgG--GACGGCA---UCAACGAc -3'
miRNA:   3'- -GCCGCgUagCUGUCGUauaAGUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.