miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7640 5' -62.8 NC_001973.1 + 21568 0.66 0.660174
Target:  5'- cGGC-GCGCGGgGUugaaGUgCUCGCCGgCCg -3'
miRNA:   3'- -UCGaCGCGCUgCG----CGgGAGCGGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 108918 0.66 0.660174
Target:  5'- uGGC-GCGCGuCaCGCUCUCGCUGcUCg -3'
miRNA:   3'- -UCGaCGCGCuGcGCGGGAGCGGC-AGg -5'
7640 5' -62.8 NC_001973.1 + 71780 0.66 0.660174
Target:  5'- gAGCUcgagGCcgGCGGCGCcCCCgUCGCCGcUCg -3'
miRNA:   3'- -UCGA----CG--CGCUGCGcGGG-AGCGGC-AGg -5'
7640 5' -62.8 NC_001973.1 + 42072 0.66 0.660174
Target:  5'- uGuCUGCGCGcCGCGgUg-CGCuCGUCCg -3'
miRNA:   3'- uC-GACGCGCuGCGCgGgaGCG-GCAGG- -5'
7640 5' -62.8 NC_001973.1 + 26200 0.66 0.660174
Target:  5'- cAGUUGCGgaagGACGCcaGCCUgCGUCGUUCg -3'
miRNA:   3'- -UCGACGCg---CUGCG--CGGGaGCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 25942 0.66 0.650497
Target:  5'- gGGCU-CGCGGC-CGaguccUCCUCGUCGUCUu -3'
miRNA:   3'- -UCGAcGCGCUGcGC-----GGGAGCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 100999 0.66 0.650497
Target:  5'- uGCUGCucaccaaauCGGCGCuGCCCUUGgCG-CCg -3'
miRNA:   3'- uCGACGc--------GCUGCG-CGGGAGCgGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 116906 0.66 0.650497
Target:  5'- cGCUGC-CGcCGaUGCCCUUGUCGUacaCCu -3'
miRNA:   3'- uCGACGcGCuGC-GCGGGAGCGGCA---GG- -5'
7640 5' -62.8 NC_001973.1 + 143512 0.66 0.650497
Target:  5'- cGCUcacGCcgGUGACGCGCCCgauGCUGgCCg -3'
miRNA:   3'- uCGA---CG--CGCUGCGCGGGag-CGGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 145034 0.66 0.650497
Target:  5'- uGCgGCGCGAgCGCGUCgagCGCCGaCUc -3'
miRNA:   3'- uCGaCGCGCU-GCGCGGga-GCGGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 6117 0.66 0.650497
Target:  5'- cGGC-GCGCGAgGgCGCCgCgauaCGCCG-CCu -3'
miRNA:   3'- -UCGaCGCGCUgC-GCGG-Ga---GCGGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 3564 0.66 0.647592
Target:  5'- cGGCgggGCGCGcgaugaccgacggcGCGCGCUucggCUCGUacagcaCGUCCa -3'
miRNA:   3'- -UCGa--CGCGC--------------UGCGCGG----GAGCG------GCAGG- -5'
7640 5' -62.8 NC_001973.1 + 155908 0.66 0.646623
Target:  5'- gGGgUGCcCGGCGauuacgaacacaaGgCCUCGUCGUCCa -3'
miRNA:   3'- -UCgACGcGCUGCg------------CgGGAGCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 124330 0.66 0.640808
Target:  5'- gAGCUGCacgcCGACGUGgCg--GCCGUCCu -3'
miRNA:   3'- -UCGACGc---GCUGCGCgGgagCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 59829 0.66 0.640808
Target:  5'- gAGgUGCGCGACaaCGCCg-CGCUGgCCa -3'
miRNA:   3'- -UCgACGCGCUGc-GCGGgaGCGGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 112771 0.66 0.640808
Target:  5'- cGGCU-CGuCGACGCucuccaccguGCCCaagUCGCCGUUg -3'
miRNA:   3'- -UCGAcGC-GCUGCG----------CGGG---AGCGGCAGg -5'
7640 5' -62.8 NC_001973.1 + 39716 0.66 0.640808
Target:  5'- gAGCaGCGCGGC-CGCCaugucCGC-GUCCa -3'
miRNA:   3'- -UCGaCGCGCUGcGCGGga---GCGgCAGG- -5'
7640 5' -62.8 NC_001973.1 + 132176 0.66 0.640808
Target:  5'- uGUUG-GUGAC-CGUCCucgUCGCUGUCCa -3'
miRNA:   3'- uCGACgCGCUGcGCGGG---AGCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 57945 0.66 0.638869
Target:  5'- --gUGgGCGACG-GCCCgaaaaaugcacgCGCCGUCg -3'
miRNA:   3'- ucgACgCGCUGCgCGGGa-----------GCGGCAGg -5'
7640 5' -62.8 NC_001973.1 + 138431 0.66 0.631112
Target:  5'- aAGUUGCGCG-CGCGCggaaaggCGCgCGUCa -3'
miRNA:   3'- -UCGACGCGCuGCGCGgga----GCG-GCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.