miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7645 5' -62.1 NC_001973.1 + 150868 0.66 0.690535
Target:  5'- uCCGGGCCUGgcCGGA-GCCGGGgCgCGUu -3'
miRNA:   3'- cGGCUCGGAC--GUCUgCGGCUCgG-GCG- -5'
7645 5' -62.1 NC_001973.1 + 126536 0.66 0.690535
Target:  5'- gGCCGAucucgcacacgGCCaGCGuguGGCGCagccgCGGGUCCGCg -3'
miRNA:   3'- -CGGCU-----------CGGaCGU---CUGCG-----GCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 106936 0.66 0.690535
Target:  5'- uCCGuGCCcGCguugaauuucAGcGCGCCGGGCgCGCu -3'
miRNA:   3'- cGGCuCGGaCG----------UC-UGCGGCUCGgGCG- -5'
7645 5' -62.1 NC_001973.1 + 104747 0.66 0.690535
Target:  5'- cGUCGcGCacucgGCGGACGCCccGCCgCGCc -3'
miRNA:   3'- -CGGCuCGga---CGUCUGCGGcuCGG-GCG- -5'
7645 5' -62.1 NC_001973.1 + 87120 0.66 0.690535
Target:  5'- uGCgCG-GCgUGCGcGCGCCGGuGCgCCGCc -3'
miRNA:   3'- -CG-GCuCGgACGUcUGCGGCU-CG-GGCG- -5'
7645 5' -62.1 NC_001973.1 + 42463 0.66 0.690535
Target:  5'- cGCCGAcGCCgacGCcGACGCCGAcgacgacuuGUCCu- -3'
miRNA:   3'- -CGGCU-CGGa--CGuCUGCGGCU---------CGGGcg -5'
7645 5' -62.1 NC_001973.1 + 12189 0.66 0.690535
Target:  5'- aCUGAGCUcgGCGGACGCguaggauuuuaCGuGCCgGCc -3'
miRNA:   3'- cGGCUCGGa-CGUCUGCG-----------GCuCGGgCG- -5'
7645 5' -62.1 NC_001973.1 + 36318 0.66 0.690535
Target:  5'- cGCCGcGGCCgacgcgGCcGACG-CGGGCCUcgGCg -3'
miRNA:   3'- -CGGC-UCGGa-----CGuCUGCgGCUCGGG--CG- -5'
7645 5' -62.1 NC_001973.1 + 11661 0.66 0.689571
Target:  5'- gGCCGcuGGCauuucGCuGGCGCUGAucagcucgaacacGCCCGCu -3'
miRNA:   3'- -CGGC--UCGga---CGuCUGCGGCU-------------CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 95340 0.66 0.680882
Target:  5'- cGCgCGAGUuuCUGCAGACGUgGAagcuguucgacgGCCUGg -3'
miRNA:   3'- -CG-GCUCG--GACGUCUGCGgCU------------CGGGCg -5'
7645 5' -62.1 NC_001973.1 + 3996 0.66 0.680882
Target:  5'- cGCCGGauaggggacgcGCUUGaacGCGCUGAGCgCGCg -3'
miRNA:   3'- -CGGCU-----------CGGACgucUGCGGCUCGgGCG- -5'
7645 5' -62.1 NC_001973.1 + 89022 0.66 0.680882
Target:  5'- cGCCGGGCCUaaaGUAGGaGgCGAuCUCGCg -3'
miRNA:   3'- -CGGCUCGGA---CGUCUgCgGCUcGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 121295 0.66 0.680882
Target:  5'- gGCCGucGCCcGCGGcgcGCGCCG-GCggaCGCg -3'
miRNA:   3'- -CGGCu-CGGaCGUC---UGCGGCuCGg--GCG- -5'
7645 5' -62.1 NC_001973.1 + 27266 0.66 0.679914
Target:  5'- aGUCGAGCaUGUGGACGCgGAaaucuuuGCgCGCc -3'
miRNA:   3'- -CGGCUCGgACGUCUGCGgCU-------CGgGCG- -5'
7645 5' -62.1 NC_001973.1 + 96111 0.66 0.671192
Target:  5'- cGCCG-GCCUGaa---GCCG-GCCgCGCg -3'
miRNA:   3'- -CGGCuCGGACgucugCGGCuCGG-GCG- -5'
7645 5' -62.1 NC_001973.1 + 124678 0.66 0.665364
Target:  5'- cGCCGcGGCUacaauugccccgagGCGGugGCCGAGCUguacgGCa -3'
miRNA:   3'- -CGGC-UCGGa-------------CGUCugCGGCUCGGg----CG- -5'
7645 5' -62.1 NC_001973.1 + 41836 0.66 0.661473
Target:  5'- aCCGAGCC-GCGGcUGCuCGAGCUgaagauccgaguCGCg -3'
miRNA:   3'- cGGCUCGGaCGUCuGCG-GCUCGG------------GCG- -5'
7645 5' -62.1 NC_001973.1 + 138793 0.66 0.661473
Target:  5'- aGCCgGAGUC-GCucuuGGCG-CGAGCCCGa -3'
miRNA:   3'- -CGG-CUCGGaCGu---CUGCgGCUCGGGCg -5'
7645 5' -62.1 NC_001973.1 + 119185 0.66 0.661473
Target:  5'- cGUCGAGCC----GACGCCGAagaagcgcggcgGCUCGCc -3'
miRNA:   3'- -CGGCUCGGacguCUGCGGCU------------CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 127511 0.66 0.661473
Target:  5'- aCUGAGCUcgGCGGGCGCguaggauuuuaCGuGCCgGCa -3'
miRNA:   3'- cGGCUCGGa-CGUCUGCG-----------GCuCGGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.