miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7645 5' -62.1 NC_001973.1 + 153870 0.68 0.564253
Target:  5'- aCCG-GCU--CAGAaauugcgGCCGAGCCCGCu -3'
miRNA:   3'- cGGCuCGGacGUCUg------CGGCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 152378 0.7 0.436122
Target:  5'- aGCCGgacGGCCggcgcggGCGGGCGCgGGGCggCGCg -3'
miRNA:   3'- -CGGC---UCGGa------CGUCUGCGgCUCGg-GCG- -5'
7645 5' -62.1 NC_001973.1 + 151909 0.7 0.452583
Target:  5'- gGCCGcgcguccuucuccAGCCggcgGCAGGCGUCGAcgcaguccuCCCGCa -3'
miRNA:   3'- -CGGC-------------UCGGa---CGUCUGCGGCUc--------GGGCG- -5'
7645 5' -62.1 NC_001973.1 + 151194 0.67 0.626361
Target:  5'- aGCCGAugacaucaugccucgGCCgGCGG-UGCCGGGUCUGa -3'
miRNA:   3'- -CGGCU---------------CGGaCGUCuGCGGCUCGGGCg -5'
7645 5' -62.1 NC_001973.1 + 151065 0.7 0.41085
Target:  5'- cUCGAGCUcgGCGGACGCguaggauccuaCGcGCCCGCc -3'
miRNA:   3'- cGGCUCGGa-CGUCUGCG-----------GCuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 150868 0.66 0.690535
Target:  5'- uCCGGGCCUGgcCGGA-GCCGGGgCgCGUu -3'
miRNA:   3'- cGGCUCGGAC--GUCUgCGGCUCgG-GCG- -5'
7645 5' -62.1 NC_001973.1 + 146104 0.78 0.144516
Target:  5'- gGUCGGGCC-GCGG-CGCUGAGCCgGCu -3'
miRNA:   3'- -CGGCUCGGaCGUCuGCGGCUCGGgCG- -5'
7645 5' -62.1 NC_001973.1 + 146060 0.78 0.134237
Target:  5'- gGuuGGGCC-GCGG-CGCCGAGCCgGCu -3'
miRNA:   3'- -CggCUCGGaCGUCuGCGGCUCGGgCG- -5'
7645 5' -62.1 NC_001973.1 + 144338 0.66 0.650758
Target:  5'- cCCGGGCaaGCGGAUGCgcgaggacgaggaCGAGCCgcCGCc -3'
miRNA:   3'- cGGCUCGgaCGUCUGCG-------------GCUCGG--GCG- -5'
7645 5' -62.1 NC_001973.1 + 143151 0.68 0.535654
Target:  5'- -gCGuGCCcGCAucGACGCCGGGCggCUGCg -3'
miRNA:   3'- cgGCuCGGaCGU--CUGCGGCUCG--GGCG- -5'
7645 5' -62.1 NC_001973.1 + 142411 0.72 0.333529
Target:  5'- --aGAGCCgGCAGACGaUCGuGCCCGg -3'
miRNA:   3'- cggCUCGGaCGUCUGC-GGCuCGGGCg -5'
7645 5' -62.1 NC_001973.1 + 140380 0.7 0.419173
Target:  5'- cGCCGAGCg-GCuGGCuCuCGAGCCgCGCg -3'
miRNA:   3'- -CGGCUCGgaCGuCUGcG-GCUCGG-GCG- -5'
7645 5' -62.1 NC_001973.1 + 139436 0.71 0.370816
Target:  5'- aCCG-GCCUGCAgGAUGCCGAuagacagaucgGCCCa- -3'
miRNA:   3'- cGGCuCGGACGU-CUGCGGCU-----------CGGGcg -5'
7645 5' -62.1 NC_001973.1 + 138793 0.66 0.661473
Target:  5'- aGCCgGAGUC-GCucuuGGCG-CGAGCCCGa -3'
miRNA:   3'- -CGG-CUCGGaCGu---CUGCgGCUCGGGCg -5'
7645 5' -62.1 NC_001973.1 + 138363 0.69 0.507578
Target:  5'- gGCCGAGCgUGCcGAaggGCaGGGCCuCGCc -3'
miRNA:   3'- -CGGCUCGgACGuCUg--CGgCUCGG-GCG- -5'
7645 5' -62.1 NC_001973.1 + 137990 0.69 0.507578
Target:  5'- cCCGuGCCguaaUAGGCGCCGAGCaCCa- -3'
miRNA:   3'- cGGCuCGGac--GUCUGCGGCUCG-GGcg -5'
7645 5' -62.1 NC_001973.1 + 137263 0.7 0.453459
Target:  5'- aGCCGAGUgUGCGG-CgGCgGGGCUCGg -3'
miRNA:   3'- -CGGCUCGgACGUCuG-CGgCUCGGGCg -5'
7645 5' -62.1 NC_001973.1 + 134991 0.71 0.40263
Target:  5'- uCCGGGCCgucggGCGGGaGCCGGGCaCGUa -3'
miRNA:   3'- cGGCUCGGa----CGUCUgCGGCUCGgGCG- -5'
7645 5' -62.1 NC_001973.1 + 133976 0.69 0.489212
Target:  5'- uCCGAcGUCUGgguguagcCGGugGCCGuGCUCGCg -3'
miRNA:   3'- cGGCU-CGGAC--------GUCugCGGCuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 133519 0.7 0.453459
Target:  5'- uGUCGGGCa-GCAGAgGCgaGGGCCgCGCg -3'
miRNA:   3'- -CGGCUCGgaCGUCUgCGg-CUCGG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.