miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7646 5' -54.5 NC_001973.1 + 47687 0.66 0.968514
Target:  5'- aGGAgAuGCGGcCGUacgugcCGGGCGGCaGGCa -3'
miRNA:   3'- gCCUgUuUGCCaGCA------GCCUGUCG-CUG- -5'
7646 5' -54.5 NC_001973.1 + 151888 0.66 0.965401
Target:  5'- aGGACGuACGGcUCGuucUCGGGCcGCG-Cg -3'
miRNA:   3'- gCCUGUuUGCC-AGC---AGCCUGuCGCuG- -5'
7646 5' -54.5 NC_001973.1 + 144339 0.66 0.965401
Target:  5'- cCGGGCAAGCGGaugCGcgaGGACgAG-GACg -3'
miRNA:   3'- -GCCUGUUUGCCa--GCag-CCUG-UCgCUG- -5'
7646 5' -54.5 NC_001973.1 + 95072 0.66 0.963432
Target:  5'- gCGGGCAgcuucgaggcgcugcAGCGcUCGUgcgCGGGCcGCGACg -3'
miRNA:   3'- -GCCUGU---------------UUGCcAGCA---GCCUGuCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 70359 0.66 0.962077
Target:  5'- aCGGGCGAGCGGcCGcUGGGuCGGUacacuuGACa -3'
miRNA:   3'- -GCCUGUUUGCCaGCaGCCU-GUCG------CUG- -5'
7646 5' -54.5 NC_001973.1 + 31063 0.66 0.962077
Target:  5'- gCGGGCAGcguGCGGaUCGagaagUUGGcCAGCGAg -3'
miRNA:   3'- -GCCUGUU---UGCC-AGC-----AGCCuGUCGCUg -5'
7646 5' -54.5 NC_001973.1 + 86872 0.66 0.962077
Target:  5'- gCGG-CA--UGGUCGUCGuGaagcugcagcGCGGCGACg -3'
miRNA:   3'- -GCCuGUuuGCCAGCAGC-C----------UGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 152331 0.66 0.962077
Target:  5'- uGGAC--GCGGUgCG-CGGGCGG-GGCg -3'
miRNA:   3'- gCCUGuuUGCCA-GCaGCCUGUCgCUG- -5'
7646 5' -54.5 NC_001973.1 + 26041 0.66 0.958539
Target:  5'- gCGGGCGAguaGCGcuuGUgGUCGGACAugGCGuCg -3'
miRNA:   3'- -GCCUGUU---UGC---CAgCAGCCUGU--CGCuG- -5'
7646 5' -54.5 NC_001973.1 + 29013 0.66 0.958539
Target:  5'- uGGGCAcagcACGcGUCG-CGGuacgccuCGGCGACg -3'
miRNA:   3'- gCCUGUu---UGC-CAGCaGCCu------GUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 76992 0.66 0.958539
Target:  5'- gCGG-CGccACGcugaucaccUCGUCGGGCGGCGGCg -3'
miRNA:   3'- -GCCuGUu-UGCc--------AGCAGCCUGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 107009 0.66 0.958539
Target:  5'- uGGGCGAcuaucugaACGGUCuGUCGGGCAagaagcucGCGu- -3'
miRNA:   3'- gCCUGUU--------UGCCAG-CAGCCUGU--------CGCug -5'
7646 5' -54.5 NC_001973.1 + 17045 0.66 0.958539
Target:  5'- uGGu--GGCGGUCGgcgcUUGGGCGGUGAg -3'
miRNA:   3'- gCCuguUUGCCAGC----AGCCUGUCGCUg -5'
7646 5' -54.5 NC_001973.1 + 123079 0.66 0.954779
Target:  5'- cCGGGCGAGCaGcUCGcccgacaGGuACAGCGGCa -3'
miRNA:   3'- -GCCUGUUUGcC-AGCag-----CC-UGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 123428 0.66 0.954779
Target:  5'- cCGGuGCAcGCGGUCGUC----AGCGGCa -3'
miRNA:   3'- -GCC-UGUuUGCCAGCAGccugUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 54038 0.66 0.954779
Target:  5'- uCGGGCA---GGUUGUUGGGCAcGgGGCc -3'
miRNA:   3'- -GCCUGUuugCCAGCAGCCUGU-CgCUG- -5'
7646 5' -54.5 NC_001973.1 + 63627 0.66 0.950796
Target:  5'- aCGGcCAAAuCGGccgCGUgGGGCGGCG-Cg -3'
miRNA:   3'- -GCCuGUUU-GCCa--GCAgCCUGUCGCuG- -5'
7646 5' -54.5 NC_001973.1 + 96610 0.67 0.946151
Target:  5'- gCGGACGcgcACGGcuaccugUCG-CGGcCGGCGGCg -3'
miRNA:   3'- -GCCUGUu--UGCC-------AGCaGCCuGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 55412 0.67 0.942143
Target:  5'- -cGAaaacGACGGuuUCGUCGG-CGGCGGCg -3'
miRNA:   3'- gcCUgu--UUGCC--AGCAGCCuGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 44674 0.67 0.942143
Target:  5'- uCGGugAGGCGGcUCGUggaGGcCGGUGAUc -3'
miRNA:   3'- -GCCugUUUGCC-AGCAg--CCuGUCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.