miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7647 5' -61.9 NC_001973.1 + 17516 0.66 0.708901
Target:  5'- cGGCCGCGCgGUCgUagucCUCgCAGUaagCGGCc -3'
miRNA:   3'- cCCGGCGCG-CAGgAa---GAG-GUCG---GCCG- -5'
7647 5' -61.9 NC_001973.1 + 112908 0.66 0.708901
Target:  5'- --uCUGCGCGUCUcgCUCCAuauguucCCGGCg -3'
miRNA:   3'- cccGGCGCGCAGGaaGAGGUc------GGCCG- -5'
7647 5' -61.9 NC_001973.1 + 9632 0.66 0.708901
Target:  5'- -cGCCGCugGCGUUCggCUCgagggcgcgguaCAGCCGGUc -3'
miRNA:   3'- ccCGGCG--CGCAGGaaGAG------------GUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 105999 0.66 0.699372
Target:  5'- -aGCCGCGCGg----UUCCGGgCCGGUu -3'
miRNA:   3'- ccCGGCGCGCaggaaGAGGUC-GGCCG- -5'
7647 5' -61.9 NC_001973.1 + 114421 0.66 0.699372
Target:  5'- cGGUCGCGag-CCUgcgCgCgAGCCGGCu -3'
miRNA:   3'- cCCGGCGCgcaGGAa--GaGgUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 7842 0.66 0.699372
Target:  5'- cGGGCgGCGCcgcgCCcg-UCgAGCUGGCg -3'
miRNA:   3'- -CCCGgCGCGca--GGaagAGgUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 8078 0.66 0.699372
Target:  5'- cGGCgCGCacGCGUUCccgCUgacggcgagcaCCGGCCGGCu -3'
miRNA:   3'- cCCG-GCG--CGCAGGaa-GA-----------GGUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 89618 0.66 0.699372
Target:  5'- cGGGCacgugcggcuuCGCGCGUUgguuUUUUUUCAGCguCGGCa -3'
miRNA:   3'- -CCCG-----------GCGCGCAG----GAAGAGGUCG--GCCG- -5'
7647 5' -61.9 NC_001973.1 + 23250 0.66 0.699372
Target:  5'- -cGCCGCGUGUCgCUgC-CCcGCCGcGCg -3'
miRNA:   3'- ccCGGCGCGCAG-GAaGaGGuCGGC-CG- -5'
7647 5' -61.9 NC_001973.1 + 94406 0.66 0.699372
Target:  5'- cGGCC-CGCGgcgCCgc--CCGGaCCGGCg -3'
miRNA:   3'- cCCGGcGCGCa--GGaagaGGUC-GGCCG- -5'
7647 5' -61.9 NC_001973.1 + 53628 0.66 0.689792
Target:  5'- cGGCgCGCGCGUgCgguaaUCCAGaUUGGCc -3'
miRNA:   3'- cCCG-GCGCGCAgGaag--AGGUC-GGCCG- -5'
7647 5' -61.9 NC_001973.1 + 14251 0.66 0.689792
Target:  5'- -cGCCGCGCGUCgaca-CCAGCaCGcGCg -3'
miRNA:   3'- ccCGGCGCGCAGgaagaGGUCG-GC-CG- -5'
7647 5' -61.9 NC_001973.1 + 2689 0.66 0.689792
Target:  5'- cGGCCGaCGCGUaaaaUCUUaCgcgUCGGCCGGg -3'
miRNA:   3'- cCCGGC-GCGCA----GGAA-Ga--GGUCGGCCg -5'
7647 5' -61.9 NC_001973.1 + 35370 0.66 0.688831
Target:  5'- cGGGCUacuuuuuGCGCG-CCgcgCUCCAcggcuaccgcGCCGcGCg -3'
miRNA:   3'- -CCCGG-------CGCGCaGGaa-GAGGU----------CGGC-CG- -5'
7647 5' -61.9 NC_001973.1 + 160072 0.66 0.684022
Target:  5'- aGGCUGCGC-UCCUcgaUCUCguGCUguuccaagugcuuuuGGCg -3'
miRNA:   3'- cCCGGCGCGcAGGA---AGAGguCGG---------------CCG- -5'
7647 5' -61.9 NC_001973.1 + 152361 0.66 0.680168
Target:  5'- -cGCCGCGCGaaugagcgagCCgga--CGGCCGGCg -3'
miRNA:   3'- ccCGGCGCGCa---------GGaagagGUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 47749 0.66 0.680168
Target:  5'- cGGCCGCccgGCGgaaucacggccUCCUcggcgCUCCucagguccaGGCCGGCc -3'
miRNA:   3'- cCCGGCG---CGC-----------AGGAa----GAGG---------UCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 4751 0.66 0.680168
Target:  5'- cGGCCGUcaccaGUUCUUUgUCC-GCCGGCg -3'
miRNA:   3'- cCCGGCGcg---CAGGAAG-AGGuCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 132817 0.66 0.679204
Target:  5'- -uGUCGCGCGUCUcgC-CCauggacuggaaauAGCCGGCc -3'
miRNA:   3'- ccCGGCGCGCAGGaaGaGG-------------UCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 61124 0.66 0.670509
Target:  5'- cGGGgCGCgGCGUCgCUcCUCgAGCucguacCGGCg -3'
miRNA:   3'- -CCCgGCG-CGCAG-GAaGAGgUCG------GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.