miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7647 5' -61.9 NC_001973.1 + 114421 0.66 0.699372
Target:  5'- cGGUCGCGag-CCUgcgCgCgAGCCGGCu -3'
miRNA:   3'- cCCGGCGCgcaGGAa--GaGgUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 112908 0.66 0.708901
Target:  5'- --uCUGCGCGUCUcgCUCCAuauguucCCGGCg -3'
miRNA:   3'- cccGGCGCGCAGGaaGAGGUc------GGCCG- -5'
7647 5' -61.9 NC_001973.1 + 111471 0.82 0.081821
Target:  5'- aGGCCGCGCGUCaagUUCgucgCCGcGCCGGCg -3'
miRNA:   3'- cCCGGCGCGCAGg--AAGa---GGU-CGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 109411 0.68 0.535436
Target:  5'- aGGcGCCgGCGCGUCgUccaagUCgagCAGCCGGUa -3'
miRNA:   3'- -CC-CGG-CGCGCAGgA-----AGag-GUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 109312 0.67 0.641391
Target:  5'- gGGGUCgaggaGCGCGUCgCgcgCgaaccggaaCAGCCGGCg -3'
miRNA:   3'- -CCCGG-----CGCGCAG-Gaa-Gag-------GUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 109197 0.66 0.660822
Target:  5'- -cGCCGCGCaG-CCggC-CCAGCuCGGCc -3'
miRNA:   3'- ccCGGCGCG-CaGGaaGaGGUCG-GCCG- -5'
7647 5' -61.9 NC_001973.1 + 105999 0.66 0.699372
Target:  5'- -aGCCGCGCGg----UUCCGGgCCGGUu -3'
miRNA:   3'- ccCGGCGCGCaggaaGAGGUC-GGCCG- -5'
7647 5' -61.9 NC_001973.1 + 104243 0.68 0.544884
Target:  5'- -cGCUGCGCGUCCg---UCAGCuguuCGGCg -3'
miRNA:   3'- ccCGGCGCGCAGGaagaGGUCG----GCCG- -5'
7647 5' -61.9 NC_001973.1 + 101437 0.67 0.651113
Target:  5'- -cGCCGuCGCaGUCCgugUUCgAGCCGGg -3'
miRNA:   3'- ccCGGC-GCG-CAGGaa-GAGgUCGGCCg -5'
7647 5' -61.9 NC_001973.1 + 99023 0.67 0.612214
Target:  5'- uGGGCCGCGacaCGUUCg---CCcGCCGGg -3'
miRNA:   3'- -CCCGGCGC---GCAGGaagaGGuCGGCCg -5'
7647 5' -61.9 NC_001973.1 + 97996 0.68 0.592818
Target:  5'- cGGUCgGCGaCGUCCacgcgcuccgUCUCCAgcauGCCGGUg -3'
miRNA:   3'- cCCGG-CGC-GCAGGa---------AGAGGU----CGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 95318 0.73 0.326844
Target:  5'- -cGCCGCGCGUUCg--UCgAGUCGGCg -3'
miRNA:   3'- ccCGGCGCGCAGGaagAGgUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 95106 0.68 0.544884
Target:  5'- cGGGCCGCGacgaCUUCa--AGCUGGCg -3'
miRNA:   3'- -CCCGGCGCgcagGAAGaggUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 94720 0.73 0.315715
Target:  5'- uGGGCgaggcggccggcaagCGCGCGUCCgugugcgUCUCgAGCggCGGCa -3'
miRNA:   3'- -CCCG---------------GCGCGCAGGa------AGAGgUCG--GCCG- -5'
7647 5' -61.9 NC_001973.1 + 94406 0.66 0.699372
Target:  5'- cGGCC-CGCGgcgCCgc--CCGGaCCGGCg -3'
miRNA:   3'- cCCGGcGCGCa--GGaagaGGUC-GGCCG- -5'
7647 5' -61.9 NC_001973.1 + 89618 0.66 0.699372
Target:  5'- cGGGCacgugcggcuuCGCGCGUUgguuUUUUUUCAGCguCGGCa -3'
miRNA:   3'- -CCCG-----------GCGCGCAG----GAAGAGGUCG--GCCG- -5'
7647 5' -61.9 NC_001973.1 + 87075 0.75 0.233693
Target:  5'- cGGCCGCGCaacgugugCUUUCUgCCGuGCCGGCa -3'
miRNA:   3'- cCCGGCGCGca------GGAAGA-GGU-CGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 86816 0.78 0.145156
Target:  5'- uGGCCGCGUgcgGUUCUUCUacaaCGGCCGGUg -3'
miRNA:   3'- cCCGGCGCG---CAGGAAGAg---GUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 86746 0.7 0.444837
Target:  5'- cGGCgGCGCGcggCCUcgUUCCgcgccuucaaGGCCGGCu -3'
miRNA:   3'- cCCGgCGCGCa--GGAa-GAGG----------UCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 86588 0.68 0.583157
Target:  5'- cGGaGCuCGCGCGcgccggCCUUUUCUAcaCCGGCg -3'
miRNA:   3'- -CC-CG-GCGCGCa-----GGAAGAGGUc-GGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.