Results 21 - 40 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7647 | 5' | -61.9 | NC_001973.1 | + | 114421 | 0.66 | 0.699372 |
Target: 5'- cGGUCGCGag-CCUgcgCgCgAGCCGGCu -3' miRNA: 3'- cCCGGCGCgcaGGAa--GaGgUCGGCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 112908 | 0.66 | 0.708901 |
Target: 5'- --uCUGCGCGUCUcgCUCCAuauguucCCGGCg -3' miRNA: 3'- cccGGCGCGCAGGaaGAGGUc------GGCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 111471 | 0.82 | 0.081821 |
Target: 5'- aGGCCGCGCGUCaagUUCgucgCCGcGCCGGCg -3' miRNA: 3'- cCCGGCGCGCAGg--AAGa---GGU-CGGCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 109411 | 0.68 | 0.535436 |
Target: 5'- aGGcGCCgGCGCGUCgUccaagUCgagCAGCCGGUa -3' miRNA: 3'- -CC-CGG-CGCGCAGgA-----AGag-GUCGGCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 109312 | 0.67 | 0.641391 |
Target: 5'- gGGGUCgaggaGCGCGUCgCgcgCgaaccggaaCAGCCGGCg -3' miRNA: 3'- -CCCGG-----CGCGCAG-Gaa-Gag-------GUCGGCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 109197 | 0.66 | 0.660822 |
Target: 5'- -cGCCGCGCaG-CCggC-CCAGCuCGGCc -3' miRNA: 3'- ccCGGCGCG-CaGGaaGaGGUCG-GCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 105999 | 0.66 | 0.699372 |
Target: 5'- -aGCCGCGCGg----UUCCGGgCCGGUu -3' miRNA: 3'- ccCGGCGCGCaggaaGAGGUC-GGCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 104243 | 0.68 | 0.544884 |
Target: 5'- -cGCUGCGCGUCCg---UCAGCuguuCGGCg -3' miRNA: 3'- ccCGGCGCGCAGGaagaGGUCG----GCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 101437 | 0.67 | 0.651113 |
Target: 5'- -cGCCGuCGCaGUCCgugUUCgAGCCGGg -3' miRNA: 3'- ccCGGC-GCG-CAGGaa-GAGgUCGGCCg -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 99023 | 0.67 | 0.612214 |
Target: 5'- uGGGCCGCGacaCGUUCg---CCcGCCGGg -3' miRNA: 3'- -CCCGGCGC---GCAGGaagaGGuCGGCCg -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 97996 | 0.68 | 0.592818 |
Target: 5'- cGGUCgGCGaCGUCCacgcgcuccgUCUCCAgcauGCCGGUg -3' miRNA: 3'- cCCGG-CGC-GCAGGa---------AGAGGU----CGGCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 95318 | 0.73 | 0.326844 |
Target: 5'- -cGCCGCGCGUUCg--UCgAGUCGGCg -3' miRNA: 3'- ccCGGCGCGCAGGaagAGgUCGGCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 95106 | 0.68 | 0.544884 |
Target: 5'- cGGGCCGCGacgaCUUCa--AGCUGGCg -3' miRNA: 3'- -CCCGGCGCgcagGAAGaggUCGGCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 94720 | 0.73 | 0.315715 |
Target: 5'- uGGGCgaggcggccggcaagCGCGCGUCCgugugcgUCUCgAGCggCGGCa -3' miRNA: 3'- -CCCG---------------GCGCGCAGGa------AGAGgUCG--GCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 94406 | 0.66 | 0.699372 |
Target: 5'- cGGCC-CGCGgcgCCgc--CCGGaCCGGCg -3' miRNA: 3'- cCCGGcGCGCa--GGaagaGGUC-GGCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 89618 | 0.66 | 0.699372 |
Target: 5'- cGGGCacgugcggcuuCGCGCGUUgguuUUUUUUCAGCguCGGCa -3' miRNA: 3'- -CCCG-----------GCGCGCAG----GAAGAGGUCG--GCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 87075 | 0.75 | 0.233693 |
Target: 5'- cGGCCGCGCaacgugugCUUUCUgCCGuGCCGGCa -3' miRNA: 3'- cCCGGCGCGca------GGAAGA-GGU-CGGCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 86816 | 0.78 | 0.145156 |
Target: 5'- uGGCCGCGUgcgGUUCUUCUacaaCGGCCGGUg -3' miRNA: 3'- cCCGGCGCG---CAGGAAGAg---GUCGGCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 86746 | 0.7 | 0.444837 |
Target: 5'- cGGCgGCGCGcggCCUcgUUCCgcgccuucaaGGCCGGCu -3' miRNA: 3'- cCCGgCGCGCa--GGAa-GAGG----------UCGGCCG- -5' |
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7647 | 5' | -61.9 | NC_001973.1 | + | 86588 | 0.68 | 0.583157 |
Target: 5'- cGGaGCuCGCGCGcgccggCCUUUUCUAcaCCGGCg -3' miRNA: 3'- -CC-CG-GCGCGCa-----GGAAGAGGUc-GGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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