miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7654 3' -53.1 NC_001973.1 + 57186 0.66 0.975781
Target:  5'- gCAGUCGaGaCGCGACGGC--GUUCAGGg -3'
miRNA:   3'- -GUUAGC-C-GUGUUGCCGgaCGAGUUCg -5'
7654 3' -53.1 NC_001973.1 + 7049 0.66 0.975781
Target:  5'- gAGUCGGUcgugaacgaGCuGCGcGcCCUGgUCGAGCg -3'
miRNA:   3'- gUUAGCCG---------UGuUGC-C-GGACgAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 5431 0.66 0.975781
Target:  5'- uGAUCGcGUcCAAgGaGCCgaGCUCGGGCa -3'
miRNA:   3'- gUUAGC-CGuGUUgC-CGGa-CGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 95121 0.66 0.975781
Target:  5'- uCAAgcuggCGGUGCAcgacccguggGCGGCCgUGCagAAGCc -3'
miRNA:   3'- -GUUa----GCCGUGU----------UGCCGG-ACGagUUCG- -5'
7654 3' -53.1 NC_001973.1 + 5931 0.66 0.973115
Target:  5'- gCGGUCGcGCGCAcgaugcgcgacGCGGCCgGCggauGCg -3'
miRNA:   3'- -GUUAGC-CGUGU-----------UGCCGGaCGaguuCG- -5'
7654 3' -53.1 NC_001973.1 + 31364 0.66 0.973115
Target:  5'- uGGUCGcCGCGGCGGUgUGCgCcAGCg -3'
miRNA:   3'- gUUAGCcGUGUUGCCGgACGaGuUCG- -5'
7654 3' -53.1 NC_001973.1 + 45951 0.66 0.973115
Target:  5'- ---aCGGCGCGcucuugacgGCGGCCggcgcGCUCGcccuGCu -3'
miRNA:   3'- guuaGCCGUGU---------UGCCGGa----CGAGUu---CG- -5'
7654 3' -53.1 NC_001973.1 + 118107 0.66 0.973115
Target:  5'- aCGGUgGGC---GCGGC--GCUCAAGCa -3'
miRNA:   3'- -GUUAgCCGuguUGCCGgaCGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 123371 0.66 0.973115
Target:  5'- gGAUCGcacgccgcGCGCAACGcGCC-GUucgUCAAGCg -3'
miRNA:   3'- gUUAGC--------CGUGUUGC-CGGaCG---AGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 109344 0.66 0.972837
Target:  5'- aCAGcCGGCGCAGCuccgcucGGCCguaGCggucgaCGAGCg -3'
miRNA:   3'- -GUUaGCCGUGUUG-------CCGGa--CGa-----GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 81786 0.66 0.972837
Target:  5'- --cUCGGCGCGaaagugcACGGCCgcgGUgUCcGGCg -3'
miRNA:   3'- guuAGCCGUGU-------UGCCGGa--CG-AGuUCG- -5'
7654 3' -53.1 NC_001973.1 + 139906 0.66 0.971417
Target:  5'- -uGUCGGUGCuGCGcGCCaUGCgcgccaugucucgcuUCGAGCa -3'
miRNA:   3'- guUAGCCGUGuUGC-CGG-ACG---------------AGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 23221 0.66 0.970243
Target:  5'- gCAGU-GGCGCAGggccUGGCgCUGCU-GAGCg -3'
miRNA:   3'- -GUUAgCCGUGUU----GCCG-GACGAgUUCG- -5'
7654 3' -53.1 NC_001973.1 + 38521 0.66 0.970243
Target:  5'- ---gCGGCACAGCgcgaGGCCgucGCaaAGGCg -3'
miRNA:   3'- guuaGCCGUGUUG----CCGGa--CGagUUCG- -5'
7654 3' -53.1 NC_001973.1 + 62016 0.66 0.970243
Target:  5'- ---gCGGCGCAACcGCCcGCUgGuGCg -3'
miRNA:   3'- guuaGCCGUGUUGcCGGaCGAgUuCG- -5'
7654 3' -53.1 NC_001973.1 + 45641 0.66 0.970243
Target:  5'- -cGUCGaGCGCGgcgucguacGCGGCCUGCgcgucucggauUCGcGCg -3'
miRNA:   3'- guUAGC-CGUGU---------UGCCGGACG-----------AGUuCG- -5'
7654 3' -53.1 NC_001973.1 + 101010 0.66 0.970243
Target:  5'- aAAUCGGCGCugcccuUGGCgCcGCUCucgauGAGCg -3'
miRNA:   3'- gUUAGCCGUGuu----GCCG-GaCGAG-----UUCG- -5'
7654 3' -53.1 NC_001973.1 + 112751 0.66 0.970243
Target:  5'- gCGAaCGGCGaccguGCGGCCgGCUCGucgacGCu -3'
miRNA:   3'- -GUUaGCCGUgu---UGCCGGaCGAGUu----CG- -5'
7654 3' -53.1 NC_001973.1 + 104607 0.66 0.969944
Target:  5'- -cGUCGGCggcgcgcgaaaagACGACGuGCCUcagaUCGAGCg -3'
miRNA:   3'- guUAGCCG-------------UGUUGC-CGGAcg--AGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 138577 0.66 0.969944
Target:  5'- --uUCGGC-CAGCGcGCCcuccggaUGCUugaCGAGCa -3'
miRNA:   3'- guuAGCCGuGUUGC-CGG-------ACGA---GUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.