miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7656 5' -54.2 NC_001973.1 + 141117 0.66 0.966935
Target:  5'- cGAGCugaacGCCGGCUCGacGCACGUgAAa- -3'
miRNA:   3'- -CUCG-----CGGCUGAGCcuUGUGCAgUUcu -5'
7656 5' -54.2 NC_001973.1 + 135678 0.66 0.966935
Target:  5'- uGGCGCUGGCcugCGGuuugGACGCGcagCGGGAg -3'
miRNA:   3'- cUCGCGGCUGa--GCC----UUGUGCa--GUUCU- -5'
7656 5' -54.2 NC_001973.1 + 31508 0.66 0.966935
Target:  5'- cGGCGCCGuCcgCGGGccaaauuuuGCGCGUCAu-- -3'
miRNA:   3'- cUCGCGGCuGa-GCCU---------UGUGCAGUucu -5'
7656 5' -54.2 NC_001973.1 + 45277 0.66 0.966935
Target:  5'- uAGCGCgGAucCUCGGcgauGCACGUCcacugguuGAGAc -3'
miRNA:   3'- cUCGCGgCU--GAGCCu---UGUGCAG--------UUCU- -5'
7656 5' -54.2 NC_001973.1 + 48940 0.66 0.966935
Target:  5'- -uGCGCCGAagCGGuucgcaAACACGUCGAu- -3'
miRNA:   3'- cuCGCGGCUgaGCC------UUGUGCAGUUcu -5'
7656 5' -54.2 NC_001973.1 + 83585 0.66 0.966935
Target:  5'- -cGCGCCGAaUUGGAguuGCGCGaaucgcgCGAGAc -3'
miRNA:   3'- cuCGCGGCUgAGCCU---UGUGCa------GUUCU- -5'
7656 5' -54.2 NC_001973.1 + 102008 0.66 0.966935
Target:  5'- -cGCGCCuccGACUCGGcguACACG--GAGAu -3'
miRNA:   3'- cuCGCGG---CUGAGCCu--UGUGCagUUCU- -5'
7656 5' -54.2 NC_001973.1 + 103905 0.66 0.966935
Target:  5'- cGAGcCGCCGcgGCgcgacgaGGAGCGCGUCGu-- -3'
miRNA:   3'- -CUC-GCGGC--UGag-----CCUUGUGCAGUucu -5'
7656 5' -54.2 NC_001973.1 + 41746 0.66 0.963676
Target:  5'- -uGCGCCaACUCGauaagcGAcguGCACGUCAAGc -3'
miRNA:   3'- cuCGCGGcUGAGC------CU---UGUGCAGUUCu -5'
7656 5' -54.2 NC_001973.1 + 121552 0.66 0.963676
Target:  5'- cGGCGUCGGCgcguguggUGGAACACGUa---- -3'
miRNA:   3'- cUCGCGGCUGa-------GCCUUGUGCAguucu -5'
7656 5' -54.2 NC_001973.1 + 26171 0.66 0.963676
Target:  5'- --cCGCCGGCgCGG-GCGCGUCGAc- -3'
miRNA:   3'- cucGCGGCUGaGCCuUGUGCAGUUcu -5'
7656 5' -54.2 NC_001973.1 + 87688 0.66 0.963676
Target:  5'- uGAGCuGCUG-CUCGGA-CAgGUCGAuGAg -3'
miRNA:   3'- -CUCG-CGGCuGAGCCUuGUgCAGUU-CU- -5'
7656 5' -54.2 NC_001973.1 + 56335 0.66 0.960199
Target:  5'- cGGCGCCGcGCUCGcGGcCGCGcUCGGGc -3'
miRNA:   3'- cUCGCGGC-UGAGC-CUuGUGC-AGUUCu -5'
7656 5' -54.2 NC_001973.1 + 104505 0.66 0.960199
Target:  5'- aGAGCGCCagcGACUCGaGcGACAgGUCGc-- -3'
miRNA:   3'- -CUCGCGG---CUGAGC-C-UUGUgCAGUucu -5'
7656 5' -54.2 NC_001973.1 + 101504 0.66 0.960199
Target:  5'- cGAGU-CCGACUC-GAugACGUcCGAGAc -3'
miRNA:   3'- -CUCGcGGCUGAGcCUugUGCA-GUUCU- -5'
7656 5' -54.2 NC_001973.1 + 145399 0.66 0.960199
Target:  5'- gGAGCGCCuGAC-----GCugGUCAAGAa -3'
miRNA:   3'- -CUCGCGG-CUGagccuUGugCAGUUCU- -5'
7656 5' -54.2 NC_001973.1 + 93646 0.66 0.960199
Target:  5'- cGAGCGCaCGACgaaCGGcaaGCG-CAAGAu -3'
miRNA:   3'- -CUCGCG-GCUGa--GCCuugUGCaGUUCU- -5'
7656 5' -54.2 NC_001973.1 + 69146 0.66 0.956499
Target:  5'- cGAGCGCaUGACUUGGGA-GCGUUAc-- -3'
miRNA:   3'- -CUCGCG-GCUGAGCCUUgUGCAGUucu -5'
7656 5' -54.2 NC_001973.1 + 66959 0.66 0.956499
Target:  5'- -uGCGCCGACUUcaaGaAGCGCuUCAGGAa -3'
miRNA:   3'- cuCGCGGCUGAG---CcUUGUGcAGUUCU- -5'
7656 5' -54.2 NC_001973.1 + 131784 0.66 0.952571
Target:  5'- cGGCgGCCGGCUCGGugaaggGGC-CGUCGAc- -3'
miRNA:   3'- cUCG-CGGCUGAGCC------UUGuGCAGUUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.