miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7657 3' -68.4 NC_001973.1 + 76656 0.66 0.42137
Target:  5'- -aCGCCcauuCCGCUGCCGUUcacccagcaGCUGGCCAa -3'
miRNA:   3'- cgGCGGc---GGCGGCGGCGG---------CGGCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 22427 0.66 0.42137
Target:  5'- cGCCGCCG-CGCC-CgCGCC-CaCGGCCu -3'
miRNA:   3'- -CGGCGGCgGCGGcG-GCGGcG-GCUGGu -5'
7657 3' -68.4 NC_001973.1 + 10183 0.66 0.42137
Target:  5'- cCCGCaCGaaGCCGUCGCgGCaCGGCg- -3'
miRNA:   3'- cGGCG-GCggCGGCGGCGgCG-GCUGgu -5'
7657 3' -68.4 NC_001973.1 + 62615 0.66 0.42137
Target:  5'- -gCGUCGUgGUCGaCgCGCgCGCCGACCu -3'
miRNA:   3'- cgGCGGCGgCGGC-G-GCG-GCGGCUGGu -5'
7657 3' -68.4 NC_001973.1 + 44552 0.66 0.42137
Target:  5'- cGCCGgCGCUGCaauuuauaGgCGCCGCCcGCUu -3'
miRNA:   3'- -CGGCgGCGGCGg-------CgGCGGCGGcUGGu -5'
7657 3' -68.4 NC_001973.1 + 101054 0.66 0.420566
Target:  5'- cUCGCCGCgcaGCUcguucagcucccgGUCGCCGCaGACCAu -3'
miRNA:   3'- cGGCGGCGg--CGG-------------CGGCGGCGgCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 117628 0.66 0.413371
Target:  5'- -aCGuaGaCUGCgG-CGCCGCCGACCAg -3'
miRNA:   3'- cgGCggC-GGCGgCgGCGGCGGCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 103932 0.66 0.413371
Target:  5'- cGUCGUCGCgGCgcggggcgUGCCGUCGCgGcGCCAg -3'
miRNA:   3'- -CGGCGGCGgCG--------GCGGCGGCGgC-UGGU- -5'
7657 3' -68.4 NC_001973.1 + 80201 0.66 0.413371
Target:  5'- aGCgCGCaCGCCGUCGagugGCCGCgGAgCAa -3'
miRNA:   3'- -CG-GCG-GCGGCGGCgg--CGGCGgCUgGU- -5'
7657 3' -68.4 NC_001973.1 + 35067 0.66 0.410198
Target:  5'- uCCGCCGCggCGCCGacgugaagcgguaCGCCGCgUGGCUg -3'
miRNA:   3'- cGGCGGCG--GCGGCg------------GCGGCG-GCUGGu -5'
7657 3' -68.4 NC_001973.1 + 26060 0.66 0.405466
Target:  5'- gGUCGgacaUGgCGUCGCUGCCGaUCGACCAa -3'
miRNA:   3'- -CGGCg---GCgGCGGCGGCGGC-GGCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 25971 0.66 0.405466
Target:  5'- uUCGUCGUCGUCGUcuCGgCGCuCGACCGg -3'
miRNA:   3'- cGGCGGCGGCGGCG--GCgGCG-GCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 139628 0.66 0.405466
Target:  5'- uGUCGUugauggagaacgCGCaGCCGgacCCGaCCGCCGGCCAg -3'
miRNA:   3'- -CGGCG------------GCGgCGGC---GGC-GGCGGCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 151773 0.66 0.397658
Target:  5'- gGCCGCCGCCcaaaGCUuggacaugGUCGUgcCCGACCAg -3'
miRNA:   3'- -CGGCGGCGG----CGG--------CGGCGgcGGCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 46340 0.66 0.397658
Target:  5'- gGCgCGCUGCUGCUGgUGCUGUuuuUGGCCGa -3'
miRNA:   3'- -CG-GCGGCGGCGGCgGCGGCG---GCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 63638 0.66 0.393019
Target:  5'- gGCCGCgugggGCgGCgCGCCgGCCGCCuguuucgagggacacGACCGg -3'
miRNA:   3'- -CGGCGg----CGgCG-GCGG-CGGCGG---------------CUGGU- -5'
7657 3' -68.4 NC_001973.1 + 11654 0.66 0.389946
Target:  5'- aCCGCUugGCCGCuggcauuuCGCUGgCGCUGAUCAg -3'
miRNA:   3'- cGGCGG--CGGCG--------GCGGCgGCGGCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 100379 0.66 0.389946
Target:  5'- cGuaGCC-UCGCgCGUCGCCGCCcACCAc -3'
miRNA:   3'- -CggCGGcGGCG-GCGGCGGCGGcUGGU- -5'
7657 3' -68.4 NC_001973.1 + 37090 0.66 0.389946
Target:  5'- uCCGagGaCCGCCGCCGa-GCCGACUc -3'
miRNA:   3'- cGGCggC-GGCGGCGGCggCGGCUGGu -5'
7657 3' -68.4 NC_001973.1 + 7632 0.66 0.389946
Target:  5'- aGCUG-CGCgCGCuCGCCGCCaGCgGGCUc -3'
miRNA:   3'- -CGGCgGCG-GCG-GCGGCGG-CGgCUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.