miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7658 5' -63.5 NC_001973.1 + 18371 0.66 0.606201
Target:  5'- cGCGCaaaacuCGGCCGgcguuucgccGGCCCucaucauucGGCUCGCc -3'
miRNA:   3'- -CGUGgu----GCCGGU----------CCGGGu--------CCGAGCGc -5'
7658 5' -63.5 NC_001973.1 + 140028 0.66 0.603294
Target:  5'- aGCACgGUGGCgGGcugcGCCCGGGCgcucgacgagaccaUCGCGg -3'
miRNA:   3'- -CGUGgUGCCGgUC----CGGGUCCG--------------AGCGC- -5'
7658 5' -63.5 NC_001973.1 + 72881 0.66 0.600388
Target:  5'- cGCGCCACGcGCUcugaacgcgcucgucGGGCgCGGaGCaCGCGa -3'
miRNA:   3'- -CGUGGUGC-CGG---------------UCCGgGUC-CGaGCGC- -5'
7658 5' -63.5 NC_001973.1 + 11280 0.66 0.596518
Target:  5'- cGCGCaCACGGCCaagcuguggcacAGGUUgGGGUUCGa- -3'
miRNA:   3'- -CGUG-GUGCCGG------------UCCGGgUCCGAGCgc -5'
7658 5' -63.5 NC_001973.1 + 10521 0.66 0.586858
Target:  5'- aGCGCCA-GGCaguaggaGGaGCCC-GGCUCGaCGa -3'
miRNA:   3'- -CGUGGUgCCGg------UC-CGGGuCCGAGC-GC- -5'
7658 5' -63.5 NC_001973.1 + 52854 0.66 0.577228
Target:  5'- cCGCgCGCGGCCGgucGGUCCA-GCUgGCGc -3'
miRNA:   3'- cGUG-GUGCCGGU---CCGGGUcCGAgCGC- -5'
7658 5' -63.5 NC_001973.1 + 121283 0.66 0.577228
Target:  5'- cGCGaaauUCGCGGCCGucGCCCGcGGCgCGCGc -3'
miRNA:   3'- -CGU----GGUGCCGGUc-CGGGU-CCGaGCGC- -5'
7658 5' -63.5 NC_001973.1 + 157223 0.66 0.571467
Target:  5'- aGCAgCACGcCCAcGGCCCAccagucgaagugcacGGC-CGCGg -3'
miRNA:   3'- -CGUgGUGCcGGU-CCGGGU---------------CCGaGCGC- -5'
7658 5' -63.5 NC_001973.1 + 13437 0.66 0.567634
Target:  5'- cGCAacaucgaCGCGGCCAGcGUCguGGCggaggccaCGCGg -3'
miRNA:   3'- -CGUg------GUGCCGGUC-CGGguCCGa-------GCGC- -5'
7658 5' -63.5 NC_001973.1 + 30069 0.66 0.55808
Target:  5'- --uCCACGGCCuGGCCCu-GCgCGCc -3'
miRNA:   3'- cguGGUGCCGGuCCGGGucCGaGCGc -5'
7658 5' -63.5 NC_001973.1 + 59288 0.66 0.55808
Target:  5'- aGCAUCGacCGGUCGGGCC--GGCcCGCGc -3'
miRNA:   3'- -CGUGGU--GCCGGUCCGGguCCGaGCGC- -5'
7658 5' -63.5 NC_001973.1 + 130199 0.66 0.55808
Target:  5'- cGCACgCGguCGGCggCAGGCgCAGGCgauaaagCGCGu -3'
miRNA:   3'- -CGUG-GU--GCCG--GUCCGgGUCCGa------GCGC- -5'
7658 5' -63.5 NC_001973.1 + 1222 0.66 0.55808
Target:  5'- cCGCCGCcGCCGccGCCCaAGGCUcCGCGc -3'
miRNA:   3'- cGUGGUGcCGGUc-CGGG-UCCGA-GCGC- -5'
7658 5' -63.5 NC_001973.1 + 133280 0.66 0.557127
Target:  5'- -gGCCGCGGCCGagaacgcGGCCgGcGGCggCGCc -3'
miRNA:   3'- cgUGGUGCCGGU-------CCGGgU-CCGa-GCGc -5'
7658 5' -63.5 NC_001973.1 + 45613 0.67 0.548573
Target:  5'- aGCGCguCGGCgauCAGGUCCAcGcGCUCGuCGa -3'
miRNA:   3'- -CGUGguGCCG---GUCCGGGU-C-CGAGC-GC- -5'
7658 5' -63.5 NC_001973.1 + 16903 0.67 0.548573
Target:  5'- cGCGCCgGCGGCgGcGGCCUcucGGCggCGCa -3'
miRNA:   3'- -CGUGG-UGCCGgU-CCGGGu--CCGa-GCGc -5'
7658 5' -63.5 NC_001973.1 + 25931 0.67 0.548573
Target:  5'- cCGCCGCGGgCGGGCUCGcGGC-CGa- -3'
miRNA:   3'- cGUGGUGCCgGUCCGGGU-CCGaGCgc -5'
7658 5' -63.5 NC_001973.1 + 59842 0.67 0.548573
Target:  5'- aCGCCGCgcuGGCCAGcGCCCacuugGGGCcuccgacgcgCGCGg -3'
miRNA:   3'- cGUGGUG---CCGGUC-CGGG-----UCCGa---------GCGC- -5'
7658 5' -63.5 NC_001973.1 + 81646 0.67 0.548573
Target:  5'- cGCGCCGCuucGGCC-GGCCCGcacaGCUUGUu -3'
miRNA:   3'- -CGUGGUG---CCGGuCCGGGUc---CGAGCGc -5'
7658 5' -63.5 NC_001973.1 + 124130 0.67 0.539116
Target:  5'- cGCGCgaACGGCUGGaGCaCCugcgcggcgAGGCUCGCu -3'
miRNA:   3'- -CGUGg-UGCCGGUC-CG-GG---------UCCGAGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.