miRNA display CGI


Results 1 - 20 of 158 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7661 5' -58.2 NC_001973.1 + 152309 0.66 0.859858
Target:  5'- cGAUCGAGCgcgcucguuaucgugGAcgcgguGCGCgGGCggGGCGCg -3'
miRNA:   3'- -CUGGCUCGa--------------CU------UGCGgCCGagCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 45969 0.66 0.859109
Target:  5'- cGGCCGGcgcgcucgcccuGCUGu-CGCUGGUgccgCGAUGCc -3'
miRNA:   3'- -CUGGCU------------CGACuuGCGGCCGa---GCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 13280 0.66 0.859109
Target:  5'- cACCGAGCUGGuCGCUaaGGUgguggacuugUCGgaACGCg -3'
miRNA:   3'- cUGGCUCGACUuGCGG--CCG----------AGC--UGCG- -5'
7661 5' -58.2 NC_001973.1 + 45805 0.66 0.854577
Target:  5'- aGGCgGcGUUGGgagucaaucuaguguGCGCCGGCgCGGCGUu -3'
miRNA:   3'- -CUGgCuCGACU---------------UGCGGCCGaGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 124259 0.66 0.851518
Target:  5'- uGCUGuGCaUGGACGUgggcccguCGGC-CGACGCu -3'
miRNA:   3'- cUGGCuCG-ACUUGCG--------GCCGaGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 133946 0.66 0.851518
Target:  5'- cACgCGGGCUGGGCGUa--CUCGACGg -3'
miRNA:   3'- cUG-GCUCGACUUGCGgccGAGCUGCg -5'
7661 5' -58.2 NC_001973.1 + 52861 0.66 0.851518
Target:  5'- cGGCCGgucgguccAGCUG-GCGCCGcGC-CGAaaCGCa -3'
miRNA:   3'- -CUGGC--------UCGACuUGCGGC-CGaGCU--GCG- -5'
7661 5' -58.2 NC_001973.1 + 70101 0.66 0.851518
Target:  5'- uGCgCGAGCgcGAACGCCucGGCgcccgCGGCGa -3'
miRNA:   3'- cUG-GCUCGa-CUUGCGG--CCGa----GCUGCg -5'
7661 5' -58.2 NC_001973.1 + 49661 0.66 0.851518
Target:  5'- --aCGAGCaaauCGcCCGGCugaUCGACGCg -3'
miRNA:   3'- cugGCUCGacuuGC-GGCCG---AGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 118056 0.66 0.851518
Target:  5'- cACUG-GCaGGACGCCGGCgUC-ACGUa -3'
miRNA:   3'- cUGGCuCGaCUUGCGGCCG-AGcUGCG- -5'
7661 5' -58.2 NC_001973.1 + 42992 0.66 0.850748
Target:  5'- uGCgGAGUUugcgugcGAGCGCCGaCUCGcCGCg -3'
miRNA:   3'- cUGgCUCGA-------CUUGCGGCcGAGCuGCG- -5'
7661 5' -58.2 NC_001973.1 + 140106 0.66 0.843736
Target:  5'- --aUGAGC-GAGCGCgCGGCcgUGAUGCu -3'
miRNA:   3'- cugGCUCGaCUUGCG-GCCGa-GCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 23561 0.66 0.843736
Target:  5'- cGACCGcAGCcg---GCCGGCg-GACGCg -3'
miRNA:   3'- -CUGGC-UCGacuugCGGCCGagCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 83861 0.66 0.843736
Target:  5'- cGAgCGAGCU---CGCCcGCgcgCGGCGCg -3'
miRNA:   3'- -CUgGCUCGAcuuGCGGcCGa--GCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 61179 0.66 0.843736
Target:  5'- cGCCGAcgcuccucGCUGAACGCgCG-CUCGggcggGCGCc -3'
miRNA:   3'- cUGGCU--------CGACUUGCG-GCcGAGC-----UGCG- -5'
7661 5' -58.2 NC_001973.1 + 18824 0.66 0.835772
Target:  5'- cGCCGuGCUGGcCaUCGGCgaCGACGCc -3'
miRNA:   3'- cUGGCuCGACUuGcGGCCGa-GCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 56410 0.66 0.835772
Target:  5'- aGCCGAGCUcGGuauCgGGCUCGGgGCu -3'
miRNA:   3'- cUGGCUCGA-CUugcGgCCGAGCUgCG- -5'
7661 5' -58.2 NC_001973.1 + 88483 0.66 0.835772
Target:  5'- cGACgGuGC----CGCCGGCgCGGCGCg -3'
miRNA:   3'- -CUGgCuCGacuuGCGGCCGaGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 47949 0.66 0.835772
Target:  5'- -uCCGaAGCgcaaagugcaacUGcGACGCgaGGCUCGGCGCg -3'
miRNA:   3'- cuGGC-UCG------------AC-UUGCGg-CCGAGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 86520 0.66 0.835772
Target:  5'- cGCCGAcCUG-GCGCCG-C-CGGCGCg -3'
miRNA:   3'- cUGGCUcGACuUGCGGCcGaGCUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.