miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7662 3' -52.6 NC_001973.1 + 121362 0.65 0.985002
Target:  5'- cGCGAccucgaccaucuGGGCCGACGcgCCCGUcACc -3'
miRNA:   3'- aCGUUu-----------UUCGGCUGCuaGGGCGcUGu -5'
7662 3' -52.6 NC_001973.1 + 7924 0.65 0.985002
Target:  5'- gGCGGAGcgcgugugcgcGGCCGGCGuggugcacgcgCCCGCGuGCGc -3'
miRNA:   3'- aCGUUUU-----------UCGGCUGCua---------GGGCGC-UGU- -5'
7662 3' -52.6 NC_001973.1 + 5491 0.66 0.983518
Target:  5'- gGUAGAAGGCuCGAuCGccgCCCGCG-CGg -3'
miRNA:   3'- aCGUUUUUCG-GCU-GCua-GGGCGCuGU- -5'
7662 3' -52.6 NC_001973.1 + 32543 0.66 0.983518
Target:  5'- cGCG---AGCuCGGCGAUCgCCGCcgccGACGc -3'
miRNA:   3'- aCGUuuuUCG-GCUGCUAG-GGCG----CUGU- -5'
7662 3' -52.6 NC_001973.1 + 109857 0.66 0.983518
Target:  5'- cGCcgcc-GCCGACGAggaCGCGGCGc -3'
miRNA:   3'- aCGuuuuuCGGCUGCUaggGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 119540 0.66 0.983518
Target:  5'- cGCAAAGAGCCucccgucuacGACauGAUCa-GCGACGu -3'
miRNA:   3'- aCGUUUUUCGG----------CUG--CUAGggCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 11160 0.66 0.982334
Target:  5'- gGCGuuGGGCaCGuacucggacuugaacACGAUCUCGCGAUu -3'
miRNA:   3'- aCGUuuUUCG-GC---------------UGCUAGGGCGCUGu -5'
7662 3' -52.6 NC_001973.1 + 1709 0.66 0.982334
Target:  5'- gGCGuuGGGCaCGuacucgcguuugaacACGAUCUCGCGAUu -3'
miRNA:   3'- aCGUuuUUCG-GC---------------UGCUAGGGCGCUGu -5'
7662 3' -52.6 NC_001973.1 + 137324 0.66 0.981509
Target:  5'- gGCG---GGCgGGCGcgCgCGCGACGa -3'
miRNA:   3'- aCGUuuuUCGgCUGCuaGgGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 140737 0.66 0.981509
Target:  5'- cGCAAGuuuAGGCUGGCGcuguaCCGCGAg- -3'
miRNA:   3'- aCGUUU---UUCGGCUGCuag--GGCGCUgu -5'
7662 3' -52.6 NC_001973.1 + 5949 0.66 0.981509
Target:  5'- cGCGAcgcGGCCGGCGGa--UGCGACGu -3'
miRNA:   3'- aCGUUuu-UCGGCUGCUaggGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 70109 0.66 0.981509
Target:  5'- cGCGAAc-GCCu-CGGcgCCCGCGGCGa -3'
miRNA:   3'- aCGUUUuuCGGcuGCUa-GGGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 121318 0.66 0.981509
Target:  5'- gGCGGAcgcGCCGACGAgcUCaCCGacaGGCGg -3'
miRNA:   3'- aCGUUUuu-CGGCUGCU--AG-GGCg--CUGU- -5'
7662 3' -52.6 NC_001973.1 + 133286 0.66 0.981509
Target:  5'- gGcCGAGAacgcGGCCGGCGGcggcgccgUCgCGCGGCGa -3'
miRNA:   3'- aC-GUUUU----UCGGCUGCU--------AGgGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 135662 0.66 0.981509
Target:  5'- aUGCAGGuguuGGCCGugGcgcuggCCUGCGGu- -3'
miRNA:   3'- -ACGUUUu---UCGGCugCua----GGGCGCUgu -5'
7662 3' -52.6 NC_001973.1 + 120323 0.66 0.980219
Target:  5'- gUGCGGAGacgacggcgcGGCCGcaucgcgauucaaacGCGAUCUgGCGGCc -3'
miRNA:   3'- -ACGUUUU----------UCGGC---------------UGCUAGGgCGCUGu -5'
7662 3' -52.6 NC_001973.1 + 72821 0.66 0.979323
Target:  5'- aUGUugacGAGGCCGGCGGcCgCCGCG-CAg -3'
miRNA:   3'- -ACGuu--UUUCGGCUGCUaG-GGCGCuGU- -5'
7662 3' -52.6 NC_001973.1 + 144382 0.66 0.979323
Target:  5'- cGCcgcc-GCCGACcauggaGAUCgCGCGACAg -3'
miRNA:   3'- aCGuuuuuCGGCUG------CUAGgGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 136465 0.66 0.979323
Target:  5'- cGCGAAguAGGCC-ACGuagCCgGCGGCGu -3'
miRNA:   3'- aCGUUU--UUCGGcUGCua-GGgCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 27920 0.66 0.979323
Target:  5'- aGCAcgcGAGCCGGCGA-CCCGacaccGCAc -3'
miRNA:   3'- aCGUuu-UUCGGCUGCUaGGGCgc---UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.