miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7663 3' -55.6 NC_001973.1 + 22735 0.66 0.940654
Target:  5'- gCGAGCCgcgGCCGUaucugUGCGAg--GgGGGCg -3'
miRNA:   3'- aGCUCGG---CGGCA-----ACGCUaagUgCCUG- -5'
7663 3' -55.6 NC_001973.1 + 18336 0.66 0.940654
Target:  5'- gUCGgauGGCCGCCGgccagcUUGCGugccAUUCGCGcGCa -3'
miRNA:   3'- -AGC---UCGGCGGC------AACGC----UAAGUGCcUG- -5'
7663 3' -55.6 NC_001973.1 + 8019 0.66 0.930903
Target:  5'- aUCGGGCCGCgGccGCGA--CACGcACa -3'
miRNA:   3'- -AGCUCGGCGgCaaCGCUaaGUGCcUG- -5'
7663 3' -55.6 NC_001973.1 + 112816 0.66 0.930903
Target:  5'- cUCG-GCCGUCGUgUGCGugaUCAugaccCGGGCg -3'
miRNA:   3'- -AGCuCGGCGGCA-ACGCua-AGU-----GCCUG- -5'
7663 3' -55.6 NC_001973.1 + 103289 0.66 0.930903
Target:  5'- gCGAGUgGC---UGCcGUUCGCGGACg -3'
miRNA:   3'- aGCUCGgCGgcaACGcUAAGUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 132533 0.66 0.925673
Target:  5'- -aGAgGCCGCCGggcGCGGcg-GCGGGCu -3'
miRNA:   3'- agCU-CGGCGGCaa-CGCUaagUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 32740 0.66 0.925673
Target:  5'- uUCGGGUCGCgCGc-GCGAUUguugaacaucacCAUGGGCg -3'
miRNA:   3'- -AGCUCGGCG-GCaaCGCUAA------------GUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 75501 0.66 0.925673
Target:  5'- aCGAGCCgcagGCCGUcucGCacggaGAUUCgaacGCGGACa -3'
miRNA:   3'- aGCUCGG----CGGCAa--CG-----CUAAG----UGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 123242 0.66 0.924058
Target:  5'- gCGucCCGCCGUUGCGucaacagaucgaccGUUCgGCGGuACa -3'
miRNA:   3'- aGCucGGCGGCAACGC--------------UAAG-UGCC-UG- -5'
7663 3' -55.6 NC_001973.1 + 124232 0.66 0.920206
Target:  5'- aCGgccaGGCCGCCGUuuacgaagcgcUGCuGUgCAUGGACg -3'
miRNA:   3'- aGC----UCGGCGGCA-----------ACGcUAaGUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 108253 0.66 0.914503
Target:  5'- aUCGAcgGCUGCCGgcGCGcggagACGGACc -3'
miRNA:   3'- -AGCU--CGGCGGCaaCGCuaag-UGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 106589 0.67 0.908565
Target:  5'- cUCGGcGCCGCCGUcaaGCGAacgaGCGcGACc -3'
miRNA:   3'- -AGCU-CGGCGGCAa--CGCUaag-UGC-CUG- -5'
7663 3' -55.6 NC_001973.1 + 95081 0.67 0.908565
Target:  5'- uUCGAGgCGCUGcaGCGcucgugCGCGGGCc -3'
miRNA:   3'- -AGCUCgGCGGCaaCGCuaa---GUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 58643 0.67 0.908565
Target:  5'- uUCGAcGCCGgCGgcGUGuucaaCGCGGACg -3'
miRNA:   3'- -AGCU-CGGCgGCaaCGCuaa--GUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 36340 0.67 0.906738
Target:  5'- gCGGGCCucGgCGUucaagagcaauaccUGCGGUaCGCGGACu -3'
miRNA:   3'- aGCUCGG--CgGCA--------------ACGCUAaGUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 38837 0.67 0.902393
Target:  5'- -gGAGgCGgCGgcgGCGAgggCGCGGGCg -3'
miRNA:   3'- agCUCgGCgGCaa-CGCUaa-GUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 51472 0.67 0.889361
Target:  5'- cUCGAGCgGCCGgguCGAUgcgCuCGGAUg -3'
miRNA:   3'- -AGCUCGgCGGCaacGCUAa--GuGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 78137 0.67 0.889361
Target:  5'- aCGuGCaCGaCCGggGCcuGAUUCGCGGAg -3'
miRNA:   3'- aGCuCG-GC-GGCaaCG--CUAAGUGCCUg -5'
7663 3' -55.6 NC_001973.1 + 21549 0.67 0.882507
Target:  5'- gUCGGGCgCGCCGUgguccCGGcgCGCGGGg -3'
miRNA:   3'- -AGCUCG-GCGGCAac---GCUaaGUGCCUg -5'
7663 3' -55.6 NC_001973.1 + 8845 0.67 0.882507
Target:  5'- cCGcGCUGCUGgcGCGGcgaCACGGGCu -3'
miRNA:   3'- aGCuCGGCGGCaaCGCUaa-GUGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.