miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7667 3' -61.8 NC_001973.1 + 84215 0.66 0.71064
Target:  5'- aGGcCGaGUCGAGCG-GCCugacgaGGAGGuuGCAGGa -3'
miRNA:   3'- -CC-GC-CGGCUCGCaCGG------CUUCC--CGUCC- -5'
7667 3' -61.8 NC_001973.1 + 56515 0.66 0.71064
Target:  5'- gGGCgGGCUcGGCGccaaGCuCGGgcGGGGCGGGc -3'
miRNA:   3'- -CCG-CCGGcUCGCa---CG-GCU--UCCCGUCC- -5'
7667 3' -61.8 NC_001973.1 + 56461 0.66 0.71064
Target:  5'- gGGCgGGCUcGGCGccaaGCuCGGgcGGGGCGGGc -3'
miRNA:   3'- -CCG-CCGGcUCGCa---CG-GCU--UCCCGUCC- -5'
7667 3' -61.8 NC_001973.1 + 31025 0.66 0.71064
Target:  5'- cGGCGcucaugaucuGCuCGAGCGUcugaacGCCGAcggcGGGCAGc -3'
miRNA:   3'- -CCGC----------CG-GCUCGCA------CGGCUu---CCCGUCc -5'
7667 3' -61.8 NC_001973.1 + 118039 0.66 0.701127
Target:  5'- gGGC-GCCGuuCGUGCUGcAcuGGCAGGa -3'
miRNA:   3'- -CCGcCGGCucGCACGGC-UucCCGUCC- -5'
7667 3' -61.8 NC_001973.1 + 38839 0.66 0.691562
Target:  5'- aGGCGGC--GGCG-G-CGAGGGcGCGGGc -3'
miRNA:   3'- -CCGCCGgcUCGCaCgGCUUCC-CGUCC- -5'
7667 3' -61.8 NC_001973.1 + 96877 0.66 0.691562
Target:  5'- uGGUGGCCGcGGaucuGUGCgCGgcGGGCGcgucGGa -3'
miRNA:   3'- -CCGCCGGC-UCg---CACG-GCuuCCCGU----CC- -5'
7667 3' -61.8 NC_001973.1 + 141410 0.66 0.681953
Target:  5'- uGCGGcCCGAcauCGUGCagcuGAAGGGCAc- -3'
miRNA:   3'- cCGCC-GGCUc--GCACGg---CUUCCCGUcc -5'
7667 3' -61.8 NC_001973.1 + 70359 0.66 0.681953
Target:  5'- -aCGGgCGAGCG-GCCGcuGGGUcGGu -3'
miRNA:   3'- ccGCCgGCUCGCaCGGCuuCCCGuCC- -5'
7667 3' -61.8 NC_001973.1 + 83942 0.66 0.681953
Target:  5'- cGGCGcGCCGcucggaggcgGGCGcGUCGAGGcaGCAGGc -3'
miRNA:   3'- -CCGC-CGGC----------UCGCaCGGCUUCc-CGUCC- -5'
7667 3' -61.8 NC_001973.1 + 94726 0.66 0.680989
Target:  5'- aGGCGGCCGGcaagcgcgcguccGUGUGCgucuCGAGcGGCGGc -3'
miRNA:   3'- -CCGCCGGCU-------------CGCACG----GCUUcCCGUCc -5'
7667 3' -61.8 NC_001973.1 + 132535 0.66 0.672306
Target:  5'- aGGCcGCCGGGCGcGgCGgcGGGCu-- -3'
miRNA:   3'- -CCGcCGGCUCGCaCgGCuuCCCGucc -5'
7667 3' -61.8 NC_001973.1 + 146103 0.66 0.66263
Target:  5'- aGGUcgGGCCGcGGCGcugaGCCGGcucGGGaGCGGGc -3'
miRNA:   3'- -CCG--CCGGC-UCGCa---CGGCU---UCC-CGUCC- -5'
7667 3' -61.8 NC_001973.1 + 14356 0.67 0.643218
Target:  5'- cGUGGUCG-GCGUgGUCGAcGGGGCGcGGc -3'
miRNA:   3'- cCGCCGGCuCGCA-CGGCU-UCCCGU-CC- -5'
7667 3' -61.8 NC_001973.1 + 50088 0.67 0.643218
Target:  5'- gGGCGGC--GGCGccaCGGAGGGCGGcGg -3'
miRNA:   3'- -CCGCCGgcUCGCacgGCUUCCCGUC-C- -5'
7667 3' -61.8 NC_001973.1 + 16914 0.67 0.633497
Target:  5'- cGGCGGCCucucGGCGgcgcaGCaaaaaGAAGGGCGu- -3'
miRNA:   3'- -CCGCCGGc---UCGCa----CGg----CUUCCCGUcc -5'
7667 3' -61.8 NC_001973.1 + 28949 0.67 0.633497
Target:  5'- gGGCGGC--AGCGgggGCCGGcagucGGGCGGc -3'
miRNA:   3'- -CCGCCGgcUCGCa--CGGCUu----CCCGUCc -5'
7667 3' -61.8 NC_001973.1 + 37757 0.67 0.633497
Target:  5'- uGGCGGCgGcAGUGUaGaUCGggGGGCGc- -3'
miRNA:   3'- -CCGCCGgC-UCGCA-C-GGCuuCCCGUcc -5'
7667 3' -61.8 NC_001973.1 + 22741 0.67 0.623775
Target:  5'- cGCGGCCGuaucUGUGCgaGggGGGCGa- -3'
miRNA:   3'- cCGCCGGCuc--GCACGg-CuuCCCGUcc -5'
7667 3' -61.8 NC_001973.1 + 158830 0.67 0.614059
Target:  5'- cGGCGGCCGAGCGcGCgGAcGaGCc-- -3'
miRNA:   3'- -CCGCCGGCUCGCaCGgCUuCcCGucc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.