miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7669 5' -55.2 NC_001973.1 + 84162 0.66 0.952737
Target:  5'- gGCCGaggcgGA-GAGCG-GCGCCgCcGACCu -3'
miRNA:   3'- -CGGCaa---CUaCUCGCuCGCGG-GcUUGG- -5'
7669 5' -55.2 NC_001973.1 + 74883 0.66 0.952737
Target:  5'- cGUCGUg---GAGCGAGCuCgCGAGCg -3'
miRNA:   3'- -CGGCAacuaCUCGCUCGcGgGCUUGg -5'
7669 5' -55.2 NC_001973.1 + 63638 0.66 0.952737
Target:  5'- gGCCGcgug-GGGCG-GCGCgCCGGccGCCu -3'
miRNA:   3'- -CGGCaacuaCUCGCuCGCG-GGCU--UGG- -5'
7669 5' -55.2 NC_001973.1 + 118100 0.66 0.950309
Target:  5'- gGgCGUgacGGUGGGCGcGGCGCUcaagcagguggcgcgCGAGCCc -3'
miRNA:   3'- -CgGCAa--CUACUCGC-UCGCGG---------------GCUUGG- -5'
7669 5' -55.2 NC_001973.1 + 53406 0.66 0.948645
Target:  5'- cGCCGgcacggGcgGAGCGccgGGCGCgUCGAAgCa -3'
miRNA:   3'- -CGGCaa----CuaCUCGC---UCGCG-GGCUUgG- -5'
7669 5' -55.2 NC_001973.1 + 121211 0.66 0.944324
Target:  5'- cGCCcucGGUcaGAGCGAGCGCCaCGcGGCg -3'
miRNA:   3'- -CGGcaaCUA--CUCGCUCGCGG-GC-UUGg -5'
7669 5' -55.2 NC_001973.1 + 74643 0.66 0.944324
Target:  5'- aGUCGcgcGGUGAGCGGGUaguuGCCC--ACCg -3'
miRNA:   3'- -CGGCaa-CUACUCGCUCG----CGGGcuUGG- -5'
7669 5' -55.2 NC_001973.1 + 32354 0.66 0.944324
Target:  5'- uCCGUacccGAUGAGCGuGUGCaugcaCGuGCCg -3'
miRNA:   3'- cGGCAa---CUACUCGCuCGCGg----GCuUGG- -5'
7669 5' -55.2 NC_001973.1 + 105830 0.66 0.939772
Target:  5'- aGCaCGUagaGAUGAucgcagccgGCGAGCGCUuCGAGCa -3'
miRNA:   3'- -CG-GCAa--CUACU---------CGCUCGCGG-GCUUGg -5'
7669 5' -55.2 NC_001973.1 + 69544 0.66 0.939772
Target:  5'- aGCCGg----GAGuCGAGCGCgaCGuAGCCg -3'
miRNA:   3'- -CGGCaacuaCUC-GCUCGCGg-GC-UUGG- -5'
7669 5' -55.2 NC_001973.1 + 124796 0.66 0.939772
Target:  5'- gGCCGcc----GGCGAGgGCCgGGGCCu -3'
miRNA:   3'- -CGGCaacuacUCGCUCgCGGgCUUGG- -5'
7669 5' -55.2 NC_001973.1 + 93735 0.66 0.934987
Target:  5'- aCCGc-GAcGAgGCGAGcCGCCCGGcgACCa -3'
miRNA:   3'- cGGCaaCUaCU-CGCUC-GCGGGCU--UGG- -5'
7669 5' -55.2 NC_001973.1 + 155521 0.67 0.929968
Target:  5'- uGCCGU---UGAGCGuccCGCCC-AGCCc -3'
miRNA:   3'- -CGGCAacuACUCGCuc-GCGGGcUUGG- -5'
7669 5' -55.2 NC_001973.1 + 57932 0.67 0.929968
Target:  5'- cGCCGUacacGAcgUGGGCGAcgGCCCGAaaaaugcacgcGCCg -3'
miRNA:   3'- -CGGCAa---CU--ACUCGCUcgCGGGCU-----------UGG- -5'
7669 5' -55.2 NC_001973.1 + 96881 0.67 0.919225
Target:  5'- gGCCGcgGAucUGugcgcGGCGGGCGCgUCGGAUCg -3'
miRNA:   3'- -CGGCaaCU--AC-----UCGCUCGCG-GGCUUGG- -5'
7669 5' -55.2 NC_001973.1 + 140028 0.67 0.919225
Target:  5'- aGCaCGgUGgcGGGCu-GCGCCCGGGCg -3'
miRNA:   3'- -CG-GCaACuaCUCGcuCGCGGGCUUGg -5'
7669 5' -55.2 NC_001973.1 + 145026 0.67 0.913501
Target:  5'- cGCCcgagUGcgGcGCGAGCGCgUCGAGCg -3'
miRNA:   3'- -CGGca--ACuaCuCGCUCGCG-GGCUUGg -5'
7669 5' -55.2 NC_001973.1 + 34623 0.67 0.912916
Target:  5'- uGCgGUUGAUGGGCuGGUaguagaaGCCCGAc-- -3'
miRNA:   3'- -CGgCAACUACUCGcUCG-------CGGGCUugg -5'
7669 5' -55.2 NC_001973.1 + 56055 0.67 0.907544
Target:  5'- uCCGUggacaggGAgcgcucgGAGCcuGAGCGCuCUGAGCCu -3'
miRNA:   3'- cGGCAa------CUa------CUCG--CUCGCG-GGCUUGG- -5'
7669 5' -55.2 NC_001973.1 + 17834 0.67 0.907544
Target:  5'- cGCCGUcGA-GGGUGGcGUGCCCGucgaaaaaguACCa -3'
miRNA:   3'- -CGGCAaCUaCUCGCU-CGCGGGCu---------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.