miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7670 3' -54 NC_001973.1 + 152337 0.66 0.96185
Target:  5'- cGGUgCGCGGgcgGGGCGCGAUaGCgCCGCgCGa -3'
miRNA:   3'- -CUA-GUGCUa--CUCGUGCUA-CG-GGUG-GU- -5'
7670 3' -54 NC_001973.1 + 39434 0.66 0.96185
Target:  5'- cGUCGCGuccaGGGCGacgcCGAUGCCCAgCu -3'
miRNA:   3'- cUAGUGCua--CUCGU----GCUACGGGUgGu -5'
7670 3' -54 NC_001973.1 + 148076 0.66 0.96185
Target:  5'- uGUCGCGuaGUGGGCcaucaGAgUGUCCACCAg -3'
miRNA:   3'- cUAGUGC--UACUCGug---CU-ACGGGUGGU- -5'
7670 3' -54 NC_001973.1 + 120362 0.66 0.958212
Target:  5'- cGAUCuggcggccaagACGgcGAGUuuggcgggGCGAUGUCCGCCGc -3'
miRNA:   3'- -CUAG-----------UGCuaCUCG--------UGCUACGGGUGGU- -5'
7670 3' -54 NC_001973.1 + 33334 0.66 0.958212
Target:  5'- gGGUCACGuUGcGGCcgcggAUGAUGCCCguGCCGg -3'
miRNA:   3'- -CUAGUGCuAC-UCG-----UGCUACGGG--UGGU- -5'
7670 3' -54 NC_001973.1 + 12976 0.66 0.954342
Target:  5'- --gCACGGgcaAGUACGAU-CCCGCCAu -3'
miRNA:   3'- cuaGUGCUac-UCGUGCUAcGGGUGGU- -5'
7670 3' -54 NC_001973.1 + 31742 0.66 0.954342
Target:  5'- --gCGCcgGGUGGGCcgugccgcgcGCGcUGCCCACCAa -3'
miRNA:   3'- cuaGUG--CUACUCG----------UGCuACGGGUGGU- -5'
7670 3' -54 NC_001973.1 + 4312 0.66 0.954342
Target:  5'- ----uCGAUGAGCGCGcccaGCCCGCg- -3'
miRNA:   3'- cuaguGCUACUCGUGCua--CGGGUGgu -5'
7670 3' -54 NC_001973.1 + 121505 0.66 0.954342
Target:  5'- --gCGCGAaGucguucAGCGCGAacgccgccagcuUGCCCACCAc -3'
miRNA:   3'- cuaGUGCUaC------UCGUGCU------------ACGGGUGGU- -5'
7670 3' -54 NC_001973.1 + 37343 0.66 0.950238
Target:  5'- cGUCACGAgcccgGAG-ACGA-GCCuCGCCAc -3'
miRNA:   3'- cUAGUGCUa----CUCgUGCUaCGG-GUGGU- -5'
7670 3' -54 NC_001973.1 + 7296 0.66 0.947661
Target:  5'- gGGUCAagcacaccgcgcuguCGGUGAacGUGCGcgGCCCGCCc -3'
miRNA:   3'- -CUAGU---------------GCUACU--CGUGCuaCGGGUGGu -5'
7670 3' -54 NC_001973.1 + 28708 0.66 0.947661
Target:  5'- aGGUCgGCGAUGAGcCGCGAcagcuucucgucgaGCCCGCuCAg -3'
miRNA:   3'- -CUAG-UGCUACUC-GUGCUa-------------CGGGUG-GU- -5'
7670 3' -54 NC_001973.1 + 7916 0.66 0.945895
Target:  5'- uGUUGCGAggcgGAGCGCGuGUGCgCgGCCGg -3'
miRNA:   3'- cUAGUGCUa---CUCGUGC-UACG-GgUGGU- -5'
7670 3' -54 NC_001973.1 + 91574 0.67 0.943633
Target:  5'- uGUCGCGAUGAGCuuuugaaacgcuCGAucgccuugucgcacUGCuCCACCu -3'
miRNA:   3'- cUAGUGCUACUCGu-----------GCU--------------ACG-GGUGGu -5'
7670 3' -54 NC_001973.1 + 6214 0.67 0.94131
Target:  5'- --gCGCGGUGccGGCGCGgcGCCCugUc -3'
miRNA:   3'- cuaGUGCUAC--UCGUGCuaCGGGugGu -5'
7670 3' -54 NC_001973.1 + 122846 0.67 0.94131
Target:  5'- ----uUGAUGcGCACGcuGUGCCCGCCc -3'
miRNA:   3'- cuaguGCUACuCGUGC--UACGGGUGGu -5'
7670 3' -54 NC_001973.1 + 10341 0.67 0.94131
Target:  5'- aGGUCgGCGAUGcggccguucGGCugGcaGCCCACCGc -3'
miRNA:   3'- -CUAG-UGCUAC---------UCGugCuaCGGGUGGU- -5'
7670 3' -54 NC_001973.1 + 133597 0.67 0.936974
Target:  5'- aGGUCACGuagauggugucgccGAGCACGAaGCCgAUCAg -3'
miRNA:   3'- -CUAGUGCua------------CUCGUGCUaCGGgUGGU- -5'
7670 3' -54 NC_001973.1 + 109575 0.67 0.93648
Target:  5'- ---gGCGGguuucGGGCGCGAgccGUCCACCAg -3'
miRNA:   3'- cuagUGCUa----CUCGUGCUa--CGGGUGGU- -5'
7670 3' -54 NC_001973.1 + 60231 0.67 0.93648
Target:  5'- uGAUCGgGcUGcuGCGCGAccuccucgagaUGCCCACCGc -3'
miRNA:   3'- -CUAGUgCuACu-CGUGCU-----------ACGGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.