miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7678 5' -57.5 NC_001973.1 + 144221 0.66 0.867055
Target:  5'- -cGCCgAGGCcgaaucgcuggUCGAGUgcgcgcUGGCGGACGa -3'
miRNA:   3'- uaCGGgUUUG-----------AGCUCGa-----GCCGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 155430 0.66 0.867055
Target:  5'- -aGCCCGcuCUCGGGCcCGGUGaGCc -3'
miRNA:   3'- uaCGGGUuuGAGCUCGaGCCGCcUGc -5'
7678 5' -57.5 NC_001973.1 + 133504 0.66 0.867055
Target:  5'- -cGUCCAcGCUCG-GCUUGuCGGGCa -3'
miRNA:   3'- uaCGGGUuUGAGCuCGAGCcGCCUGc -5'
7678 5' -57.5 NC_001973.1 + 7726 0.66 0.867055
Target:  5'- -cGCCCGAcugacGCUgGAGCacCGGUGcGGCGc -3'
miRNA:   3'- uaCGGGUU-----UGAgCUCGa-GCCGC-CUGC- -5'
7678 5' -57.5 NC_001973.1 + 17243 0.66 0.859552
Target:  5'- -aGCCCAuauaaauguACUCG-GCcgCGGCGGcCGc -3'
miRNA:   3'- uaCGGGUu--------UGAGCuCGa-GCCGCCuGC- -5'
7678 5' -57.5 NC_001973.1 + 83797 0.66 0.859552
Target:  5'- -gGCCCGGcACUCGGacgagcugggccGCgcgCGGCGGAg- -3'
miRNA:   3'- uaCGGGUU-UGAGCU------------CGa--GCCGCCUgc -5'
7678 5' -57.5 NC_001973.1 + 79798 0.66 0.851847
Target:  5'- aGUGUUCGAACUCGGGC-CGGuuGcCGa -3'
miRNA:   3'- -UACGGGUUUGAGCUCGaGCCgcCuGC- -5'
7678 5' -57.5 NC_001973.1 + 43624 0.66 0.851847
Target:  5'- -cGCCgAccAGCUCGAGCagcagccugUCGGC-GACGa -3'
miRNA:   3'- uaCGGgU--UUGAGCUCG---------AGCCGcCUGC- -5'
7678 5' -57.5 NC_001973.1 + 146366 0.66 0.851847
Target:  5'- -gGCuCCAGACacaUGAGCgugugccCGGCGGGCa -3'
miRNA:   3'- uaCG-GGUUUGa--GCUCGa------GCCGCCUGc -5'
7678 5' -57.5 NC_001973.1 + 39455 0.66 0.843946
Target:  5'- gAUGCCC-AGCUCGAcGUaUCGGUGcGCGu -3'
miRNA:   3'- -UACGGGuUUGAGCU-CG-AGCCGCcUGC- -5'
7678 5' -57.5 NC_001973.1 + 52801 0.66 0.843946
Target:  5'- cUGCgcggCGAACUCGGGCUCGaGCGcGCu -3'
miRNA:   3'- uACGg---GUUUGAGCUCGAGC-CGCcUGc -5'
7678 5' -57.5 NC_001973.1 + 104130 0.66 0.843946
Target:  5'- cGUGUCCGagGACgaggaCGAGCacgaGGCGGugGa -3'
miRNA:   3'- -UACGGGU--UUGa----GCUCGag--CCGCCugC- -5'
7678 5' -57.5 NC_001973.1 + 23848 0.66 0.842343
Target:  5'- -aGCCCGAGCUgugCGAGCUgcugucccgcaaGGCGGuCa -3'
miRNA:   3'- uaCGGGUUUGA---GCUCGAg-----------CCGCCuGc -5'
7678 5' -57.5 NC_001973.1 + 37314 0.66 0.835856
Target:  5'- -aGCCCGGAgaCGAGCcCGGa-GACGa -3'
miRNA:   3'- uaCGGGUUUgaGCUCGaGCCgcCUGC- -5'
7678 5' -57.5 NC_001973.1 + 37290 0.66 0.835856
Target:  5'- -aGCCCGGAgaCGAGCcCGGa-GACGa -3'
miRNA:   3'- uaCGGGUUUgaGCUCGaGCCgcCUGC- -5'
7678 5' -57.5 NC_001973.1 + 37242 0.66 0.835856
Target:  5'- -aGCCCGGAgaCGAGCcCGGa-GACGa -3'
miRNA:   3'- uaCGGGUUUgaGCUCGaGCCgcCUGC- -5'
7678 5' -57.5 NC_001973.1 + 21261 0.66 0.827584
Target:  5'- cAUGUCCAAA-UCGAGCcgCGGCGucCGc -3'
miRNA:   3'- -UACGGGUUUgAGCUCGa-GCCGCcuGC- -5'
7678 5' -57.5 NC_001973.1 + 26848 0.67 0.819137
Target:  5'- cAUGUCCAAACgccagUCGAuCUCGaccGCGGGCGc -3'
miRNA:   3'- -UACGGGUUUG-----AGCUcGAGC---CGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 10480 0.67 0.819137
Target:  5'- -cGCCCGuGCUgGGGUUgcaCGaGCGGGCGc -3'
miRNA:   3'- uaCGGGUuUGAgCUCGA---GC-CGCCUGC- -5'
7678 5' -57.5 NC_001973.1 + 7258 0.67 0.810523
Target:  5'- gAUGCgCAg---CGGGCUCGGCGcGCGg -3'
miRNA:   3'- -UACGgGUuugaGCUCGAGCCGCcUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.