miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7679 3' -53.8 NC_001973.1 + 121840 0.66 0.971517
Target:  5'- gGCcCGAAC-CGGuuUCGGCCGcCGCGa -3'
miRNA:   3'- -CGaGUUUGaGCUcgAGCCGGUuGCGC- -5'
7679 3' -53.8 NC_001973.1 + 11588 0.66 0.971517
Target:  5'- uGCUCAugcuguACUCGccCUCGGCgCAAaGCGu -3'
miRNA:   3'- -CGAGUu-----UGAGCucGAGCCG-GUUgCGC- -5'
7679 3' -53.8 NC_001973.1 + 78417 0.66 0.971517
Target:  5'- cUUCAAACggcuguUCGAGga-GGCCGGCGUGg -3'
miRNA:   3'- cGAGUUUG------AGCUCgagCCGGUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 67444 0.66 0.971517
Target:  5'- aGgUCGGGCacCGGGCUCG-CgGACGCGu -3'
miRNA:   3'- -CgAGUUUGa-GCUCGAGCcGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 109184 0.66 0.969776
Target:  5'- cGCUCGccgAGCgCGccgcgcagccggcccAGCUCGGCCucgauCGCGu -3'
miRNA:   3'- -CGAGU---UUGaGC---------------UCGAGCCGGuu---GCGC- -5'
7679 3' -53.8 NC_001973.1 + 100448 0.66 0.968574
Target:  5'- --aCGAGCUCGAGUUC-GCCucgaccguGACGCu -3'
miRNA:   3'- cgaGUUUGAGCUCGAGcCGG--------UUGCGc -5'
7679 3' -53.8 NC_001973.1 + 52721 0.66 0.968574
Target:  5'- cGC-CGcAGCUCGAGCgccaGGC-GGCGCGu -3'
miRNA:   3'- -CGaGU-UUGAGCUCGag--CCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 73779 0.66 0.968574
Target:  5'- gGCgggGAACUCGAGCgaguucgccaGGCUcucGACGCGc -3'
miRNA:   3'- -CGag-UUUGAGCUCGag--------CCGG---UUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 79800 0.66 0.968574
Target:  5'- uGUUCGAACUCGGGC-CGGUUGcCGa- -3'
miRNA:   3'- -CGAGUUUGAGCUCGaGCCGGUuGCgc -5'
7679 3' -53.8 NC_001973.1 + 109538 0.66 0.968574
Target:  5'- cGCUUuugGGGCgCGAGCcgCGcgaacGCCGGCGCGg -3'
miRNA:   3'- -CGAG---UUUGaGCUCGa-GC-----CGGUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 56321 0.66 0.968574
Target:  5'- -gUUAAACUCGcuCUCGGCgCcGCGCu -3'
miRNA:   3'- cgAGUUUGAGCucGAGCCG-GuUGCGc -5'
7679 3' -53.8 NC_001973.1 + 121609 0.66 0.967651
Target:  5'- aGCguguGAUugUCGAGCagcacuugcaguuuUUGGCCGACGCGc -3'
miRNA:   3'- -CGagu-UUG--AGCUCG--------------AGCCGGUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 57114 0.66 0.967651
Target:  5'- gGCUCAcguaaaaguugaacAGCUCGcAGUUgGGCgAuuGCGCGu -3'
miRNA:   3'- -CGAGU--------------UUGAGC-UCGAgCCGgU--UGCGC- -5'
7679 3' -53.8 NC_001973.1 + 63915 0.66 0.965421
Target:  5'- aGCUCGAGCUgGAGCUgaGCgAcuGCGUGc -3'
miRNA:   3'- -CGAGUUUGAgCUCGAgcCGgU--UGCGC- -5'
7679 3' -53.8 NC_001973.1 + 137189 0.66 0.965421
Target:  5'- cGCUCAGccACUCGcGGCgcgagucgcgCGGC-GGCGCGu -3'
miRNA:   3'- -CGAGUU--UGAGC-UCGa---------GCCGgUUGCGC- -5'
7679 3' -53.8 NC_001973.1 + 137812 0.66 0.965421
Target:  5'- -gUCGAaccACUCGGGCa-GGUCGucGCGCGg -3'
miRNA:   3'- cgAGUU---UGAGCUCGagCCGGU--UGCGC- -5'
7679 3' -53.8 NC_001973.1 + 50184 0.66 0.965421
Target:  5'- gGCgugCAcGACUU--GCUCGGCCGuguACGCGu -3'
miRNA:   3'- -CGa--GU-UUGAGcuCGAGCCGGU---UGCGC- -5'
7679 3' -53.8 NC_001973.1 + 115761 0.66 0.965421
Target:  5'- uGCUCGAAUgcugcCGcAGCgcgCGGCCGACa-- -3'
miRNA:   3'- -CGAGUUUGa----GC-UCGa--GCCGGUUGcgc -5'
7679 3' -53.8 NC_001973.1 + 39396 0.66 0.965094
Target:  5'- uGCUCGAcgGCgcgCGccAGgUCGGCCGcggugagGCGCGu -3'
miRNA:   3'- -CGAGUU--UGa--GC--UCgAGCCGGU-------UGCGC- -5'
7679 3' -53.8 NC_001973.1 + 27598 0.66 0.962052
Target:  5'- cGCUCGua---GAGCaCGGCCGcCGCGu -3'
miRNA:   3'- -CGAGUuugagCUCGaGCCGGUuGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.