miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7681 5' -57.9 NC_001973.1 + 112848 0.66 0.885381
Target:  5'- cGCCCG-CGcACA--GCGCCagcUCGGGCUUg -3'
miRNA:   3'- -CGGGCuGC-UGUagUGCGG---AGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 58728 0.66 0.885381
Target:  5'- cGgCCGACuuuguGCAgcggCGCGCCgUCGcGCCCc -3'
miRNA:   3'- -CgGGCUGc----UGUa---GUGCGG-AGCuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 33358 0.66 0.885381
Target:  5'- uGCCCGugccggccGCGAUccggAUCACG-UUCGAGgCCg -3'
miRNA:   3'- -CGGGC--------UGCUG----UAGUGCgGAGCUCgGG- -5'
7681 5' -57.9 NC_001973.1 + 37290 0.66 0.885381
Target:  5'- aGCCCGGaGACGa---GCCcggagaCGAGCCCg -3'
miRNA:   3'- -CGGGCUgCUGUagugCGGa-----GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 62705 0.66 0.885381
Target:  5'- --gCGACGACGUCGCGaaaaaCUU--GCCCa -3'
miRNA:   3'- cggGCUGCUGUAGUGCg----GAGcuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 99657 0.66 0.885381
Target:  5'- -aCUGGCGAUugaugCGCGCCaUCGucucccGCCCg -3'
miRNA:   3'- cgGGCUGCUGua---GUGCGG-AGCu-----CGGG- -5'
7681 5' -57.9 NC_001973.1 + 115359 0.66 0.885381
Target:  5'- cGCCCGAgGACAUCGaGCaCUacguggacgCGA-CCCg -3'
miRNA:   3'- -CGGGCUgCUGUAGUgCG-GA---------GCUcGGG- -5'
7681 5' -57.9 NC_001973.1 + 37082 0.66 0.885381
Target:  5'- cGCCCGAuucCGAgGaC-CGCCgcCGAGCCg -3'
miRNA:   3'- -CGGGCU---GCUgUaGuGCGGa-GCUCGGg -5'
7681 5' -57.9 NC_001973.1 + 48571 0.66 0.885381
Target:  5'- cGCgCCGACGACGacCAgaugcgguacgUGCUgcagacCGAGCCCa -3'
miRNA:   3'- -CG-GGCUGCUGUa-GU-----------GCGGa-----GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 110342 0.66 0.885381
Target:  5'- uGCUgGACG-CGuUCGcCGCCUCGgcGGCCg -3'
miRNA:   3'- -CGGgCUGCuGU-AGU-GCGGAGC--UCGGg -5'
7681 5' -57.9 NC_001973.1 + 131186 0.66 0.878583
Target:  5'- uUUCGAgGGCGU-GCcCCUUGAGCCCu -3'
miRNA:   3'- cGGGCUgCUGUAgUGcGGAGCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 154044 0.66 0.878583
Target:  5'- gGCCCGAUG-CAguuugaGUCUgucgaCGAGCCCg -3'
miRNA:   3'- -CGGGCUGCuGUagug--CGGA-----GCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 24214 0.66 0.878583
Target:  5'- cCCCGAguaCGAguUCACGCCUCacaauuucCCCg -3'
miRNA:   3'- cGGGCU---GCUguAGUGCGGAGcuc-----GGG- -5'
7681 5' -57.9 NC_001973.1 + 48393 0.66 0.878583
Target:  5'- cGCCCGACa--GUCgGCGCU--GAGCCUg -3'
miRNA:   3'- -CGGGCUGcugUAG-UGCGGagCUCGGG- -5'
7681 5' -57.9 NC_001973.1 + 82957 0.66 0.871579
Target:  5'- -aCCGACGcccGCGUCGcCGCCgcCGccGCCCa -3'
miRNA:   3'- cgGGCUGC---UGUAGU-GCGGa-GCu-CGGG- -5'
7681 5' -57.9 NC_001973.1 + 77362 0.66 0.871579
Target:  5'- -aCCGACGcgGCcgCGCGCCcgCGcGCCg -3'
miRNA:   3'- cgGGCUGC--UGuaGUGCGGa-GCuCGGg -5'
7681 5' -57.9 NC_001973.1 + 39007 0.66 0.871579
Target:  5'- cGCgCCGACGACuAUCcgaaaAUGgCUCGuaacGCCCc -3'
miRNA:   3'- -CG-GGCUGCUG-UAG-----UGCgGAGCu---CGGG- -5'
7681 5' -57.9 NC_001973.1 + 142414 0.66 0.871579
Target:  5'- -gCCGGCaGACgAUCGUGCCcggCGAGCCg -3'
miRNA:   3'- cgGGCUG-CUG-UAGUGCGGa--GCUCGGg -5'
7681 5' -57.9 NC_001973.1 + 101969 0.66 0.871579
Target:  5'- --gCGGCGACGaugCGCGCCagCGuGUCCg -3'
miRNA:   3'- cggGCUGCUGUa--GUGCGGa-GCuCGGG- -5'
7681 5' -57.9 NC_001973.1 + 94672 0.66 0.871579
Target:  5'- aGCCgGGCGACA-CG-GCCUaCGuGCUCu -3'
miRNA:   3'- -CGGgCUGCUGUaGUgCGGA-GCuCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.