miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7685 5' -64.6 NC_001973.1 + 89538 0.66 0.564823
Target:  5'- --gGCggUGGGCGAgGCGGUgCGCCCGAu -3'
miRNA:   3'- gagCGg-GCCCGCU-CGUCGaGCGGGCU- -5'
7685 5' -64.6 NC_001973.1 + 132451 0.66 0.563876
Target:  5'- -gCGCCggcgGGGCGcGGCcucgucgGGCUCGCCgCGAu -3'
miRNA:   3'- gaGCGGg---CCCGC-UCG-------UCGAGCGG-GCU- -5'
7685 5' -64.6 NC_001973.1 + 84645 0.66 0.563876
Target:  5'- gCUgGCCCGGGCG-GUGaCUCGCgacaaguugaacgCCGAg -3'
miRNA:   3'- -GAgCGGGCCCGCuCGUcGAGCG-------------GGCU- -5'
7685 5' -64.6 NC_001973.1 + 96645 0.66 0.556315
Target:  5'- -gCGCCaauucaaauguuucaGGGaCGGGCGGUUCuggugGCCCGAa -3'
miRNA:   3'- gaGCGGg--------------CCC-GCUCGUCGAG-----CGGGCU- -5'
7685 5' -64.6 NC_001973.1 + 62496 0.66 0.555372
Target:  5'- gUCGUaCGGcaaccGCGAGCAcgugacgcacucGCUCGCCCGc -3'
miRNA:   3'- gAGCGgGCC-----CGCUCGU------------CGAGCGGGCu -5'
7685 5' -64.6 NC_001973.1 + 57324 0.66 0.545967
Target:  5'- gCUCGUCCGcGGCcucguccgaGGGCAGCUC-UUCGAc -3'
miRNA:   3'- -GAGCGGGC-CCG---------CUCGUCGAGcGGGCU- -5'
7685 5' -64.6 NC_001973.1 + 94288 0.66 0.545967
Target:  5'- -gCGCCgaGGGaaGGCGGCgCGCCCGc -3'
miRNA:   3'- gaGCGGg-CCCgcUCGUCGaGCGGGCu -5'
7685 5' -64.6 NC_001973.1 + 37254 0.66 0.545967
Target:  5'- --aGCCCGGaGaCGAGC--CUCGCCaCGAg -3'
miRNA:   3'- gagCGGGCC-C-GCUCGucGAGCGG-GCU- -5'
7685 5' -64.6 NC_001973.1 + 37350 0.66 0.545967
Target:  5'- --aGCCCGGaGaCGAGC--CUCGCCaCGAg -3'
miRNA:   3'- gagCGGGCC-C-GCUCGucGAGCGG-GCU- -5'
7685 5' -64.6 NC_001973.1 + 37374 0.66 0.545967
Target:  5'- --aGCCCGGaGaCGAGC--CUCGCCaCGAg -3'
miRNA:   3'- gagCGGGCC-C-GCUCGucGAGCGG-GCU- -5'
7685 5' -64.6 NC_001973.1 + 53399 0.66 0.545967
Target:  5'- cCUCGCCCGccGGCacGGGCGGagCGCCgGGc -3'
miRNA:   3'- -GAGCGGGC--CCG--CUCGUCgaGCGGgCU- -5'
7685 5' -64.6 NC_001973.1 + 97876 0.66 0.545967
Target:  5'- -cCGUCgUGGGCGuAGCAG-UCGCCCu- -3'
miRNA:   3'- gaGCGG-GCCCGC-UCGUCgAGCGGGcu -5'
7685 5' -64.6 NC_001973.1 + 138371 0.66 0.545967
Target:  5'- -gUGCCgaaGGGCaGGGC--CUCGCCCGAc -3'
miRNA:   3'- gaGCGGg--CCCG-CUCGucGAGCGGGCU- -5'
7685 5' -64.6 NC_001973.1 + 87912 0.66 0.545029
Target:  5'- --gGCCCGugaacuuGGCGAuCAGCUCGCUCu- -3'
miRNA:   3'- gagCGGGC-------CCGCUcGUCGAGCGGGcu -5'
7685 5' -64.6 NC_001973.1 + 150883 0.66 0.527317
Target:  5'- --aGCCgGGGCGcGUuccacgAGCUCGgCCGAc -3'
miRNA:   3'- gagCGGgCCCGCuCG------UCGAGCgGGCU- -5'
7685 5' -64.6 NC_001973.1 + 23728 0.67 0.50891
Target:  5'- gCUCGCUgaCGGGCccGaCGGCgaccgCGCCCGGc -3'
miRNA:   3'- -GAGCGG--GCCCGcuC-GUCGa----GCGGGCU- -5'
7685 5' -64.6 NC_001973.1 + 102149 0.67 0.50891
Target:  5'- cCUCGCgaCGGGuCGAGCAGCa-GgUCGAa -3'
miRNA:   3'- -GAGCGg-GCCC-GCUCGUCGagCgGGCU- -5'
7685 5' -64.6 NC_001973.1 + 34917 0.67 0.497091
Target:  5'- aUCGCUuccgUGGcGCGAGCgAGCUCGCgaccuacuccaccgCCGAg -3'
miRNA:   3'- gAGCGG----GCC-CGCUCG-UCGAGCG--------------GGCU- -5'
7685 5' -64.6 NC_001973.1 + 24525 0.67 0.490779
Target:  5'- aCUCGagcgucaauuuUgCGGGCGAGaAGCUCGCCgaCGAg -3'
miRNA:   3'- -GAGC-----------GgGCCCGCUCgUCGAGCGG--GCU- -5'
7685 5' -64.6 NC_001973.1 + 146386 0.67 0.472953
Target:  5'- -gUGCCCGG-CGGGCAGgUCGCUg-- -3'
miRNA:   3'- gaGCGGGCCcGCUCGUCgAGCGGgcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.