miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7697 3' -55.6 NC_001973.1 + 152213 0.66 0.937588
Target:  5'- -aGCGcCCGUCGaAGCgcgUCAGUagcaccacUUGGGCc -3'
miRNA:   3'- ugCGCaGGCGGC-UCG---AGUCA--------AAUCCG- -5'
7697 3' -55.6 NC_001973.1 + 30348 0.66 0.937588
Target:  5'- uCGCG-CagGCCGAGUUCGGgccgccGGCg -3'
miRNA:   3'- uGCGCaGg-CGGCUCGAGUCaaau--CCG- -5'
7697 3' -55.6 NC_001973.1 + 121666 0.66 0.934662
Target:  5'- gGCGCGUCgcucgcggCGCCcggauaccgguacgcGAGCUCGGcggcGGCg -3'
miRNA:   3'- -UGCGCAG--------GCGG---------------CUCGAGUCaaauCCG- -5'
7697 3' -55.6 NC_001973.1 + 146799 0.66 0.932663
Target:  5'- cACGCcuuccaccCCGCCGGGCgugCGGgugUUAGuGCu -3'
miRNA:   3'- -UGCGca------GGCGGCUCGa--GUCa--AAUC-CG- -5'
7697 3' -55.6 NC_001973.1 + 11257 0.66 0.932663
Target:  5'- aACGCGUacugguccCCGCCGAGCgcgCAcac--GGCc -3'
miRNA:   3'- -UGCGCA--------GGCGGCUCGa--GUcaaauCCG- -5'
7697 3' -55.6 NC_001973.1 + 56462 0.66 0.9275
Target:  5'- gGCGgGcUCggCGCCaAGCUCGGgcgGGGCg -3'
miRNA:   3'- -UGCgC-AG--GCGGcUCGAGUCaaaUCCG- -5'
7697 3' -55.6 NC_001973.1 + 56516 0.66 0.9275
Target:  5'- gGCGgGcUCggCGCCaAGCUCGGgcgGGGCg -3'
miRNA:   3'- -UGCgC-AG--GCGGcUCGAGUCaaaUCCG- -5'
7697 3' -55.6 NC_001973.1 + 123517 0.66 0.9221
Target:  5'- gGCGCGcUCGCCG-GCgCAGUgcAGcGCg -3'
miRNA:   3'- -UGCGCaGGCGGCuCGaGUCAaaUC-CG- -5'
7697 3' -55.6 NC_001973.1 + 26270 0.66 0.916461
Target:  5'- -aGCGUCCGCuuccaaCGAGCUCucc---GGCu -3'
miRNA:   3'- ugCGCAGGCG------GCUCGAGucaaauCCG- -5'
7697 3' -55.6 NC_001973.1 + 19714 0.66 0.916461
Target:  5'- uACGCGUCgGCCGgAGCUC----UAGaGUa -3'
miRNA:   3'- -UGCGCAGgCGGC-UCGAGucaaAUC-CG- -5'
7697 3' -55.6 NC_001973.1 + 126571 0.66 0.915305
Target:  5'- cGCGgGUCCG-CGGGCUUGGcgaucacguccUGGGCg -3'
miRNA:   3'- -UGCgCAGGCgGCUCGAGUCaa---------AUCCG- -5'
7697 3' -55.6 NC_001973.1 + 158787 0.66 0.910585
Target:  5'- gACGCccuGUUCGCCGAGaUCAGacaggGGGUc -3'
miRNA:   3'- -UGCG---CAGGCGGCUCgAGUCaaa--UCCG- -5'
7697 3' -55.6 NC_001973.1 + 105938 0.66 0.910585
Target:  5'- --uCGUCCGCguCGAGCUUcuucaGGUgcacgUAGGCg -3'
miRNA:   3'- ugcGCAGGCG--GCUCGAG-----UCAa----AUCCG- -5'
7697 3' -55.6 NC_001973.1 + 128311 0.67 0.904474
Target:  5'- gACGCcaaCUGCUGAuuuuGCUCGGUUUuGGCc -3'
miRNA:   3'- -UGCGca-GGCGGCU----CGAGUCAAAuCCG- -5'
7697 3' -55.6 NC_001973.1 + 51656 0.67 0.891556
Target:  5'- -gGCGaCCGCCGAGgaCGcGg--AGGCg -3'
miRNA:   3'- ugCGCaGGCGGCUCgaGU-CaaaUCCG- -5'
7697 3' -55.6 NC_001973.1 + 7851 0.67 0.884755
Target:  5'- cCGCGcCCGUCGAGCUgGcgcgccaGGGCg -3'
miRNA:   3'- uGCGCaGGCGGCUCGAgUcaaa---UCCG- -5'
7697 3' -55.6 NC_001973.1 + 136584 0.67 0.884755
Target:  5'- uGCGCGcCgGCgCGAcGCUCAGcucgUcGGGCg -3'
miRNA:   3'- -UGCGCaGgCG-GCU-CGAGUCa---AaUCCG- -5'
7697 3' -55.6 NC_001973.1 + 109180 0.67 0.884755
Target:  5'- cGCGCGcUCGCCGAGCgcgccgcgCAGcc--GGCc -3'
miRNA:   3'- -UGCGCaGGCGGCUCGa-------GUCaaauCCG- -5'
7697 3' -55.6 NC_001973.1 + 12138 0.67 0.87049
Target:  5'- uACGCGUCUGCCGGGgUCAa------- -3'
miRNA:   3'- -UGCGCAGGCGGCUCgAGUcaaauccg -5'
7697 3' -55.6 NC_001973.1 + 158712 0.68 0.863035
Target:  5'- gACGCccuGUUCGCCGAGaUCAGgcgAGGa -3'
miRNA:   3'- -UGCG---CAGGCGGCUCgAGUCaaaUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.