miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7722 5' -54.6 NC_001973.1 + 22792 0.66 0.956809
Target:  5'- --gGCAGUUCa-GCGCGAACgauugccggugcgccGCGGGCu -3'
miRNA:   3'- gagCGUCGAGagCGCGCUUG---------------UGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 108743 0.66 0.95527
Target:  5'- gUCGC-GCUCgUCGaCGCG-GCGCGGGg -3'
miRNA:   3'- gAGCGuCGAG-AGC-GCGCuUGUGCUUg -5'
7722 5' -54.6 NC_001973.1 + 22972 0.66 0.95527
Target:  5'- -gCGCGGCgg-CGCGCcGACGCcGACg -3'
miRNA:   3'- gaGCGUCGagaGCGCGcUUGUGcUUG- -5'
7722 5' -54.6 NC_001973.1 + 137857 0.66 0.951263
Target:  5'- -gCGCAGCUCUUugcucaGCGCGGuCAgGGccGCg -3'
miRNA:   3'- gaGCGUCGAGAG------CGCGCUuGUgCU--UG- -5'
7722 5' -54.6 NC_001973.1 + 142682 0.66 0.951263
Target:  5'- uCUCGC-GCUCUUGCuaaucauCGAGCACGcgUa -3'
miRNA:   3'- -GAGCGuCGAGAGCGc------GCUUGUGCuuG- -5'
7722 5' -54.6 NC_001973.1 + 139972 0.66 0.951263
Target:  5'- aUUGCaAGCgCUUGCGCGcGCugguCGAGCu -3'
miRNA:   3'- gAGCG-UCGaGAGCGCGCuUGu---GCUUG- -5'
7722 5' -54.6 NC_001973.1 + 58782 0.66 0.95085
Target:  5'- -gCGCcguggugaaccugAGCg--UGCGCGAGCugGAGCu -3'
miRNA:   3'- gaGCG-------------UCGagaGCGCGCUUGugCUUG- -5'
7722 5' -54.6 NC_001973.1 + 777 0.66 0.947023
Target:  5'- -cCGUAGUUgcCUCGCGUGAaauccGC-CGAACg -3'
miRNA:   3'- gaGCGUCGA--GAGCGCGCU-----UGuGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 10267 0.66 0.947023
Target:  5'- -aCGgAGUUUgcgUCGCGUcgucGAACGCGGACg -3'
miRNA:   3'- gaGCgUCGAG---AGCGCG----CUUGUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 15353 0.66 0.947023
Target:  5'- -gCGCGGCg-UUGCGgugucguacaCGAACACGGGCu -3'
miRNA:   3'- gaGCGUCGagAGCGC----------GCUUGUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 93977 0.66 0.947023
Target:  5'- -aCGCGGC-CaUGUGCGAGCGC-AACa -3'
miRNA:   3'- gaGCGUCGaGaGCGCGCUUGUGcUUG- -5'
7722 5' -54.6 NC_001973.1 + 95090 0.66 0.947023
Target:  5'- -cUGCAGCgCUCguGCGCGGGcCGCGAc- -3'
miRNA:   3'- gaGCGUCGaGAG--CGCGCUU-GUGCUug -5'
7722 5' -54.6 NC_001973.1 + 153512 0.66 0.947023
Target:  5'- -cCGaCAGCUCgUCGU-CGGACAgCGAACa -3'
miRNA:   3'- gaGC-GUCGAG-AGCGcGCUUGU-GCUUG- -5'
7722 5' -54.6 NC_001973.1 + 145010 0.66 0.942546
Target:  5'- uUgGCGGCUCcggcggCGCcCGAgugcgGCGCGAGCg -3'
miRNA:   3'- gAgCGUCGAGa-----GCGcGCU-----UGUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 141557 0.66 0.942546
Target:  5'- gCUCGCcgccGCgcaagCUCGCGCucGACACGuACg -3'
miRNA:   3'- -GAGCGu---CGa----GAGCGCGc-UUGUGCuUG- -5'
7722 5' -54.6 NC_001973.1 + 110083 0.66 0.93783
Target:  5'- -gCGCuGUUCgCGCGCGAcgucuACGCGcGCg -3'
miRNA:   3'- gaGCGuCGAGaGCGCGCU-----UGUGCuUG- -5'
7722 5' -54.6 NC_001973.1 + 28062 0.66 0.93783
Target:  5'- -cUGUAGUUaagggacgCGCGCGGGCACGAc- -3'
miRNA:   3'- gaGCGUCGAga------GCGCGCUUGUGCUug -5'
7722 5' -54.6 NC_001973.1 + 120822 0.66 0.93783
Target:  5'- aUCGC-GC-CgugCcCGCGGACGCGGACg -3'
miRNA:   3'- gAGCGuCGaGa--GcGCGCUUGUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 23821 0.67 0.932874
Target:  5'- -aCGCGGCcCUCGC-CGAGuucaagUACGAGCc -3'
miRNA:   3'- gaGCGUCGaGAGCGcGCUU------GUGCUUG- -5'
7722 5' -54.6 NC_001973.1 + 73589 0.67 0.927676
Target:  5'- aCUCGUucGGCUUuaGCGCGAcC-CGGGCg -3'
miRNA:   3'- -GAGCG--UCGAGagCGCGCUuGuGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.