miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7728 3' -62.9 NC_001973.1 + 90420 0.66 0.626683
Target:  5'- cGGCGGUGuGcAGCGCGUGCGaCUuUAGg -3'
miRNA:   3'- -CCGCCGC-CuUCGCGCGCGCgGGcAUU- -5'
7728 3' -62.9 NC_001973.1 + 55889 0.66 0.626683
Target:  5'- cGGCGGCGGcAGGCuCGgGCucggGCUCGg-- -3'
miRNA:   3'- -CCGCCGCC-UUCGcGCgCG----CGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 37757 0.66 0.616905
Target:  5'- uGGCGGCGGcaguguagaucgGGGgGCGC-CGCCgCGc-- -3'
miRNA:   3'- -CCGCCGCC------------UUCgCGCGcGCGG-GCauu -5'
7728 3' -62.9 NC_001973.1 + 6511 0.66 0.616905
Target:  5'- gGGCGGCGcGGGCGUGCcgacgauuuuGCgGCUgGUGAa -3'
miRNA:   3'- -CCGCCGCcUUCGCGCG----------CG-CGGgCAUU- -5'
7728 3' -62.9 NC_001973.1 + 42609 0.66 0.616905
Target:  5'- uGCGGCGcGAGgGCGCGguCGCCaCGg-- -3'
miRNA:   3'- cCGCCGCcUUCgCGCGC--GCGG-GCauu -5'
7728 3' -62.9 NC_001973.1 + 53050 0.66 0.616905
Target:  5'- uGGUGGCuuuGGAAGaaggGCGCcCGCCUGUu- -3'
miRNA:   3'- -CCGCCG---CCUUCg---CGCGcGCGGGCAuu -5'
7728 3' -62.9 NC_001973.1 + 14016 0.66 0.616905
Target:  5'- cGGUGGCGGGcGGCGuCG-GCGUCgCGUu- -3'
miRNA:   3'- -CCGCCGCCU-UCGC-GCgCGCGG-GCAuu -5'
7728 3' -62.9 NC_001973.1 + 86734 0.66 0.616905
Target:  5'- cGCGGCGacGAacggcGGCGCGCG-GCCuCGUu- -3'
miRNA:   3'- cCGCCGC--CU-----UCGCGCGCgCGG-GCAuu -5'
7728 3' -62.9 NC_001973.1 + 51814 0.66 0.607138
Target:  5'- uGCuGCGcGAGGCGCcCGCGUgCGUGGu -3'
miRNA:   3'- cCGcCGC-CUUCGCGcGCGCGgGCAUU- -5'
7728 3' -62.9 NC_001973.1 + 96880 0.66 0.607138
Target:  5'- uGGCcGCGGAucugugcgcGGCGgGCGCGUCgGa-- -3'
miRNA:   3'- -CCGcCGCCU---------UCGCgCGCGCGGgCauu -5'
7728 3' -62.9 NC_001973.1 + 104225 0.66 0.607138
Target:  5'- aGGCGaucGCGcucGgcGCGCuGCGCGUCCGUc- -3'
miRNA:   3'- -CCGC---CGC---CuuCGCG-CGCGCGGGCAuu -5'
7728 3' -62.9 NC_001973.1 + 140889 0.66 0.607138
Target:  5'- cGCGGCGuc-GCGCGCGacccaGCCCu--- -3'
miRNA:   3'- cCGCCGCcuuCGCGCGCg----CGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 45805 0.66 0.606162
Target:  5'- aGGCGGCguuGGGAGUcaaucuaGUGUGCGCCgGc-- -3'
miRNA:   3'- -CCGCCG---CCUUCG-------CGCGCGCGGgCauu -5'
7728 3' -62.9 NC_001973.1 + 44420 0.66 0.601285
Target:  5'- aGCGGCuccgcucggGGAucgaacgggcgcucgGGCGCGgGCGCUCGg-- -3'
miRNA:   3'- cCGCCG---------CCU---------------UCGCGCgCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 83942 0.66 0.597387
Target:  5'- cGGCGcGCcgcucGGAGGCGgGCGCGUCg---- -3'
miRNA:   3'- -CCGC-CG-----CCUUCGCgCGCGCGGgcauu -5'
7728 3' -62.9 NC_001973.1 + 109164 0.66 0.597387
Target:  5'- gGGCGaGcCGGucGCcCGCGCGCUCGc-- -3'
miRNA:   3'- -CCGC-C-GCCuuCGcGCGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 144160 0.66 0.597387
Target:  5'- aGCcGCaGGAcuacgAGCGCGCGCGCgCGg-- -3'
miRNA:   3'- cCGcCG-CCU-----UCGCGCGCGCGgGCauu -5'
7728 3' -62.9 NC_001973.1 + 9821 0.66 0.596413
Target:  5'- cGGCGucguCGGAgaaGGCGCuuuccucGCGCGCCCa--- -3'
miRNA:   3'- -CCGCc---GCCU---UCGCG-------CGCGCGGGcauu -5'
7728 3' -62.9 NC_001973.1 + 77354 0.66 0.587659
Target:  5'- cGCGGCacaccGAcGCGgcCGCGCGCCCGc-- -3'
miRNA:   3'- cCGCCGc----CUuCGC--GCGCGCGGGCauu -5'
7728 3' -62.9 NC_001973.1 + 34969 0.66 0.587659
Target:  5'- cGCGcucaCGGAcgaGGUGUGCGUGCCCGc-- -3'
miRNA:   3'- cCGCc---GCCU---UCGCGCGCGCGGGCauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.