miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7763 5' -55.2 NC_001973.1 + 52627 0.66 0.929594
Target:  5'- gUCgggacgCCGGuCGACGaGCACGCccgccacguUGGCg -3'
miRNA:   3'- aAGaaaa--GGCC-GCUGC-CGUGCG---------ACUG- -5'
7763 5' -55.2 NC_001973.1 + 38841 0.66 0.924203
Target:  5'- -------gCGGCGGCGGCgaggGCGCgGGCg -3'
miRNA:   3'- aagaaaagGCCGCUGCCG----UGCGaCUG- -5'
7763 5' -55.2 NC_001973.1 + 7767 0.66 0.924203
Target:  5'- -------gCGGCGGCGGCGucgaggaGCUGGCu -3'
miRNA:   3'- aagaaaagGCCGCUGCCGUg------CGACUG- -5'
7763 5' -55.2 NC_001973.1 + 16900 0.66 0.918565
Target:  5'- gUUCgcg-CCGGCGGCGGCG-GCcucucGGCg -3'
miRNA:   3'- -AAGaaaaGGCCGCUGCCGUgCGa----CUG- -5'
7763 5' -55.2 NC_001973.1 + 53672 0.66 0.918565
Target:  5'- cUCUUUgcuggcgcgUCUGGCGuugcgauuCGGCGCcgagGCUGACc -3'
miRNA:   3'- aAGAAA---------AGGCCGCu-------GCCGUG----CGACUG- -5'
7763 5' -55.2 NC_001973.1 + 143514 0.66 0.918565
Target:  5'- cUCacg-CCGGUGACGcGCccgAUGCUGGCc -3'
miRNA:   3'- aAGaaaaGGCCGCUGC-CG---UGCGACUG- -5'
7763 5' -55.2 NC_001973.1 + 105677 0.66 0.912683
Target:  5'- gUUUUgcgagUCGGuCGugaGCGGCACGCUGAa -3'
miRNA:   3'- aAGAAaa---GGCC-GC---UGCCGUGCGACUg -5'
7763 5' -55.2 NC_001973.1 + 125338 0.66 0.906557
Target:  5'- gUCUcUUCgCGGCGACGGUggaGC-GGCa -3'
miRNA:   3'- aAGAaAAG-GCCGCUGCCGug-CGaCUG- -5'
7763 5' -55.2 NC_001973.1 + 30400 0.66 0.906557
Target:  5'- -------gCGGCGGCGGCGgCGgaGGCg -3'
miRNA:   3'- aagaaaagGCCGCUGCCGU-GCgaCUG- -5'
7763 5' -55.2 NC_001973.1 + 3562 0.67 0.90019
Target:  5'- ------gCCGGCGG-GGCGCGCgaUGACc -3'
miRNA:   3'- aagaaaaGGCCGCUgCCGUGCG--ACUG- -5'
7763 5' -55.2 NC_001973.1 + 36567 0.67 0.893584
Target:  5'- ---gUUUuuGGCG--GGCGCGUUGACg -3'
miRNA:   3'- aagaAAAggCCGCugCCGUGCGACUG- -5'
7763 5' -55.2 NC_001973.1 + 147073 0.67 0.893584
Target:  5'- -----aUCUGGCgcgugGAgGGCGCGCUGAa -3'
miRNA:   3'- aagaaaAGGCCG-----CUgCCGUGCGACUg -5'
7763 5' -55.2 NC_001973.1 + 158747 0.67 0.886743
Target:  5'- -gCUgaagCCGGCGAcCGaGCGCGCgccGACc -3'
miRNA:   3'- aaGAaaa-GGCCGCU-GC-CGUGCGa--CUG- -5'
7763 5' -55.2 NC_001973.1 + 97278 0.67 0.886743
Target:  5'- gUCg---CCGGCGAgGGCuucuacaauuGCGCcGACg -3'
miRNA:   3'- aAGaaaaGGCCGCUgCCG----------UGCGaCUG- -5'
7763 5' -55.2 NC_001973.1 + 135936 0.67 0.886046
Target:  5'- -------gCGGCGAUGGCGCGCcaagugcgccaagUGGCa -3'
miRNA:   3'- aagaaaagGCCGCUGCCGUGCG-------------ACUG- -5'
7763 5' -55.2 NC_001973.1 + 74792 0.67 0.879671
Target:  5'- gUCg---CCGGgGugGGCGCGCacgcgaGGCg -3'
miRNA:   3'- aAGaaaaGGCCgCugCCGUGCGa-----CUG- -5'
7763 5' -55.2 NC_001973.1 + 35681 0.67 0.879671
Target:  5'- ------gCCGaCGGCGGCGCGgUGGCg -3'
miRNA:   3'- aagaaaaGGCcGCUGCCGUGCgACUG- -5'
7763 5' -55.2 NC_001973.1 + 123879 0.67 0.879671
Target:  5'- --------gGGaCGACGGCACGCUGGu -3'
miRNA:   3'- aagaaaaggCC-GCUGCCGUGCGACUg -5'
7763 5' -55.2 NC_001973.1 + 122525 0.67 0.879671
Target:  5'- gUCUUUgucgggggaCGaGCGGCGGCGgCGCUGGu -3'
miRNA:   3'- aAGAAAag-------GC-CGCUGCCGU-GCGACUg -5'
7763 5' -55.2 NC_001973.1 + 53851 0.67 0.872373
Target:  5'- cUCgcc-CCGGCGGCGGCggcgccgccgaGCGC-GGCg -3'
miRNA:   3'- aAGaaaaGGCCGCUGCCG-----------UGCGaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.