miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
780 5' -57.1 NC_000852.3 + 241705 0.66 0.968962
Target:  5'- uUCUGAcgaauacaacgAGCCCGCgcccaaaCCUAAGCCCa--- -3'
miRNA:   3'- -AGGCU-----------UUGGGCGa------GGAUUCGGGcgag -5'
780 5' -57.1 NC_000852.3 + 283250 0.66 0.968962
Target:  5'- uUCCGuugcGACCUGCUCC--AGUCCucuGUUCg -3'
miRNA:   3'- -AGGCu---UUGGGCGAGGauUCGGG---CGAG- -5'
780 5' -57.1 NC_000852.3 + 197274 0.66 0.962898
Target:  5'- gCCGAAACCCGUgCCaGuGCCUGUn- -3'
miRNA:   3'- aGGCUUUGGGCGaGGaUuCGGGCGag -5'
780 5' -57.1 NC_000852.3 + 197586 0.66 0.962898
Target:  5'- aCCaAAACCCGCaccaaagCCgcaccaAAGCCCGCa- -3'
miRNA:   3'- aGGcUUUGGGCGa------GGa-----UUCGGGCGag -5'
780 5' -57.1 NC_000852.3 + 185304 0.67 0.944258
Target:  5'- aCCuAAGCCCuCUUCUAAGCCCuCUUc -3'
miRNA:   3'- aGGcUUUGGGcGAGGAUUCGGGcGAG- -5'
780 5' -57.1 NC_000852.3 + 132627 0.67 0.935343
Target:  5'- -gCGAAACCUGCUCCguauuauacGAGCCC-Ca- -3'
miRNA:   3'- agGCUUUGGGCGAGGa--------UUCGGGcGag -5'
780 5' -57.1 NC_000852.3 + 158247 0.67 0.930564
Target:  5'- cCCuAAACCCGCcCCUAAaCCCGCn- -3'
miRNA:   3'- aGGcUUUGGGCGaGGAUUcGGGCGag -5'
780 5' -57.1 NC_000852.3 + 270808 0.67 0.925571
Target:  5'- gUCCuAAACCCGCUCCUAAaCCa--UCa -3'
miRNA:   3'- -AGGcUUUGGGCGAGGAUUcGGgcgAG- -5'
780 5' -57.1 NC_000852.3 + 158463 0.68 0.909304
Target:  5'- aCCGAAACCCGUgCCaAAGCCUa--- -3'
miRNA:   3'- aGGCUUUGGGCGaGGaUUCGGGcgag -5'
780 5' -57.1 NC_000852.3 + 24332 0.68 0.909304
Target:  5'- nCCcAAACCCGUUCCaAAaCCCGUUCc -3'
miRNA:   3'- aGGcUUUGGGCGAGGaUUcGGGCGAG- -5'
780 5' -57.1 NC_000852.3 + 210509 0.68 0.909304
Target:  5'- gCCGGugucuACCUGUacUCCUucgcccugAAGCCCGCUg -3'
miRNA:   3'- aGGCUu----UGGGCG--AGGA--------UUCGGGCGAg -5'
780 5' -57.1 NC_000852.3 + 219749 0.68 0.903455
Target:  5'- aUCUGAAGCUCGUUUCUGAGCaggagaagCGCaUCg -3'
miRNA:   3'- -AGGCUUUGGGCGAGGAUUCGg-------GCG-AG- -5'
780 5' -57.1 NC_000852.3 + 75703 0.68 0.897397
Target:  5'- aUCCGuGAACaaaaagaaCGCUCCUAAaCCCGCa- -3'
miRNA:   3'- -AGGC-UUUGg-------GCGAGGAUUcGGGCGag -5'
780 5' -57.1 NC_000852.3 + 158295 0.68 0.897397
Target:  5'- cCCuAAACCCGCaaCgAAGCCCGCa- -3'
miRNA:   3'- aGGcUUUGGGCGagGaUUCGGGCGag -5'
780 5' -57.1 NC_000852.3 + 138189 0.69 0.891131
Target:  5'- uUCU---GCCCGCaUCCUGAGCCC-UUCu -3'
miRNA:   3'- -AGGcuuUGGGCG-AGGAUUCGGGcGAG- -5'
780 5' -57.1 NC_000852.3 + 188893 0.69 0.856809
Target:  5'- aCCuAAACCCGCaCCUAAaCCCGCa- -3'
miRNA:   3'- aGGcUUUGGGCGaGGAUUcGGGCGag -5'
780 5' -57.1 NC_000852.3 + 329362 0.69 0.856809
Target:  5'- cUuuGGGcUCCGCUCCUGgucgaacaugGGCuCCGCUCc -3'
miRNA:   3'- -AggCUUuGGGCGAGGAU----------UCG-GGCGAG- -5'
780 5' -57.1 NC_000852.3 + 76389 0.69 0.856809
Target:  5'- aCCcAAACCCGCaCCUAAaCCCGCa- -3'
miRNA:   3'- aGGcUUUGGGCGaGGAUUcGGGCGag -5'
780 5' -57.1 NC_000852.3 + 220976 0.69 0.856809
Target:  5'- -aCGAAAUCUGC-CCUucggagacuucAAGUCCGCUCu -3'
miRNA:   3'- agGCUUUGGGCGaGGA-----------UUCGGGCGAG- -5'
780 5' -57.1 NC_000852.3 + 1382 0.69 0.856809
Target:  5'- cUuuGGGcUCCGCUCCUGgucgaacaugGGCuCCGCUCc -3'
miRNA:   3'- -AggCUUuGGGCGAGGAU----------UCG-GGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.