miRNA display CGI


Results 1 - 20 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
780 5' -57.1 NC_000852.3 + 329362 0.69 0.856809
Target:  5'- cUuuGGGcUCCGCUCCUGgucgaacaugGGCuCCGCUCc -3'
miRNA:   3'- -AggCUUuGGGCGAGGAU----------UCG-GGCGAG- -5'
780 5' -57.1 NC_000852.3 + 283250 0.66 0.968962
Target:  5'- uUCCGuugcGACCUGCUCC--AGUCCucuGUUCg -3'
miRNA:   3'- -AGGCu---UUGGGCGAGGauUCGGG---CGAG- -5'
780 5' -57.1 NC_000852.3 + 273637 0.74 0.633973
Target:  5'- aCCGGGACCUGCUCCUGuGCCgagaccgagCGCg- -3'
miRNA:   3'- aGGCUUUGGGCGAGGAUuCGG---------GCGag -5'
780 5' -57.1 NC_000852.3 + 270849 0.75 0.547353
Target:  5'- gCCcucACCgGgUCCUAAGCCCGCUCc -3'
miRNA:   3'- aGGcuuUGGgCgAGGAUUCGGGCGAG- -5'
780 5' -57.1 NC_000852.3 + 270808 0.67 0.925571
Target:  5'- gUCCuAAACCCGCUCCUAAaCCa--UCa -3'
miRNA:   3'- -AGGcUUUGGGCGAGGAUUcGGgcgAG- -5'
780 5' -57.1 NC_000852.3 + 241705 0.66 0.968962
Target:  5'- uUCUGAcgaauacaacgAGCCCGCgcccaaaCCUAAGCCCa--- -3'
miRNA:   3'- -AGGCU-----------UUGGGCGa------GGAUUCGGGcgag -5'
780 5' -57.1 NC_000852.3 + 241597 0.72 0.729758
Target:  5'- aCCGAAACCCGCaCCgaaaCCCGCa- -3'
miRNA:   3'- aGGCUUUGGGCGaGGauucGGGCGag -5'
780 5' -57.1 NC_000852.3 + 241573 0.72 0.729758
Target:  5'- aCCGAAACCCGCaCCgaaaCCCGCa- -3'
miRNA:   3'- aGGCUUUGGGCGaGGauucGGGCGag -5'
780 5' -57.1 NC_000852.3 + 241537 0.74 0.633973
Target:  5'- aCCGAAACCCGCgCCaGAaCCCGCg- -3'
miRNA:   3'- aGGCUUUGGGCGaGGaUUcGGGCGag -5'
780 5' -57.1 NC_000852.3 + 241489 0.73 0.701468
Target:  5'- aCCGAAACCCGCaCCaGAaCCCGCa- -3'
miRNA:   3'- aGGCUUUGGGCGaGGaUUcGGGCGag -5'
780 5' -57.1 NC_000852.3 + 220976 0.69 0.856809
Target:  5'- -aCGAAAUCUGC-CCUucggagacuucAAGUCCGCUCu -3'
miRNA:   3'- agGCUUUGGGCGaGGA-----------UUCGGGCGAG- -5'
780 5' -57.1 NC_000852.3 + 219749 0.68 0.903455
Target:  5'- aUCUGAAGCUCGUUUCUGAGCaggagaagCGCaUCg -3'
miRNA:   3'- -AGGCUUUGGGCGAGGAUUCGg-------GCG-AG- -5'
780 5' -57.1 NC_000852.3 + 210509 0.68 0.909304
Target:  5'- gCCGGugucuACCUGUacUCCUucgcccugAAGCCCGCUg -3'
miRNA:   3'- aGGCUu----UGGGCG--AGGA--------UUCGGGCGAg -5'
780 5' -57.1 NC_000852.3 + 197586 0.66 0.962898
Target:  5'- aCCaAAACCCGCaccaaagCCgcaccaAAGCCCGCa- -3'
miRNA:   3'- aGGcUUUGGGCGa------GGa-----UUCGGGCGag -5'
780 5' -57.1 NC_000852.3 + 197550 0.83 0.20986
Target:  5'- aCCGAAACCCGCaCCaAAGCCCGCa- -3'
miRNA:   3'- aGGCUUUGGGCGaGGaUUCGGGCGag -5'
780 5' -57.1 NC_000852.3 + 197501 1.09 0.005262
Target:  5'- cUCCGAAACCCGCUCCUAAGCCCGCUCc -3'
miRNA:   3'- -AGGCUUUGGGCGAGGAUUCGGGCGAG- -5'
780 5' -57.1 NC_000852.3 + 197465 0.89 0.091592
Target:  5'- cUCCGAAACCCGCUCCgaaaCCCGCUCc -3'
miRNA:   3'- -AGGCUUUGGGCGAGGauucGGGCGAG- -5'
780 5' -57.1 NC_000852.3 + 197430 0.8 0.343507
Target:  5'- aCCGAAACCUGCaCCgAAGCCCGCa- -3'
miRNA:   3'- aGGCUUUGGGCGaGGaUUCGGGCGag -5'
780 5' -57.1 NC_000852.3 + 197382 0.83 0.228186
Target:  5'- aCCGAAACCCGCUCCgaaaccugcaccgAAGUCCGCa- -3'
miRNA:   3'- aGGCUUUGGGCGAGGa------------UUCGGGCGag -5'
780 5' -57.1 NC_000852.3 + 197346 0.87 0.119315
Target:  5'- aCCGAAACCCGCUCCgaaaccugcaccgAAGCCCGCa- -3'
miRNA:   3'- aGGCUUUGGGCGAGGa------------UUCGGGCGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.