miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
780 5' -57.1 NC_000852.3 + 270849 0.75 0.547353
Target:  5'- gCCcucACCgGgUCCUAAGCCCGCUCc -3'
miRNA:   3'- aGGcuuUGGgCgAGGAUUCGGGCGAG- -5'
780 5' -57.1 NC_000852.3 + 188918 0.71 0.784075
Target:  5'- cUCCuAAACCCGCaCCUAAaCCCGCa- -3'
miRNA:   3'- -AGGcUUUGGGCGaGGAUUcGGGCGag -5'
780 5' -57.1 NC_000852.3 + 22033 0.72 0.729758
Target:  5'- aCCGAAACCCGCaCCgaaaCCCGCa- -3'
miRNA:   3'- aGGCUUUGGGCGaGGauucGGGCGag -5'
780 5' -57.1 NC_000852.3 + 22057 0.72 0.729758
Target:  5'- aCCGAAACCCGCaCCgaaaCCCGCa- -3'
miRNA:   3'- aGGCUUUGGGCGaGGauucGGGCGag -5'
780 5' -57.1 NC_000852.3 + 241573 0.72 0.729758
Target:  5'- aCCGAAACCCGCaCCgaaaCCCGCa- -3'
miRNA:   3'- aGGCUUUGGGCGaGGauucGGGCGag -5'
780 5' -57.1 NC_000852.3 + 241597 0.72 0.729758
Target:  5'- aCCGAAACCCGCaCCgaaaCCCGCa- -3'
miRNA:   3'- aGGCUUUGGGCGaGGauucGGGCGag -5'
780 5' -57.1 NC_000852.3 + 156333 0.72 0.710961
Target:  5'- uUCCGcgcCCUGCaaaUCCUAguggugucaaAGCCCGCUCg -3'
miRNA:   3'- -AGGCuuuGGGCG---AGGAU----------UCGGGCGAG- -5'
780 5' -57.1 NC_000852.3 + 241489 0.73 0.701468
Target:  5'- aCCGAAACCCGCaCCaGAaCCCGCa- -3'
miRNA:   3'- aGGCUUUGGGCGaGGaUUcGGGCGag -5'
780 5' -57.1 NC_000852.3 + 241537 0.74 0.633973
Target:  5'- aCCGAAACCCGCgCCaGAaCCCGCg- -3'
miRNA:   3'- aGGCUUUGGGCGaGGaUUcGGGCGag -5'
780 5' -57.1 NC_000852.3 + 188857 0.71 0.801282
Target:  5'- aCCuAAACCCGCgCCUAAaCCCGCg- -3'
miRNA:   3'- aGGcUUUGGGCGaGGAUUcGGGCGag -5'
780 5' -57.1 NC_000852.3 + 64664 0.7 0.82924
Target:  5'- aCUGGGACCCGUUCCcgAAGaaauaaccauuaccaCCCGCUg -3'
miRNA:   3'- aGGCUUUGGGCGAGGa-UUC---------------GGGCGAg -5'
780 5' -57.1 NC_000852.3 + 63723 0.7 0.82924
Target:  5'- aCUGGGACCCGUUCCcgAAGaaauaaccauuaccaCCCGCUg -3'
miRNA:   3'- aGGCUUUGGGCGAGGa-UUC---------------GGGCGAg -5'
780 5' -57.1 NC_000852.3 + 185304 0.67 0.944258
Target:  5'- aCCuAAGCCCuCUUCUAAGCCCuCUUc -3'
miRNA:   3'- aGGcUUUGGGcGAGGAUUCGGGcGAG- -5'
780 5' -57.1 NC_000852.3 + 270808 0.67 0.925571
Target:  5'- gUCCuAAACCCGCUCCUAAaCCa--UCa -3'
miRNA:   3'- -AGGcUUUGGGCGAGGAUUcGGgcgAG- -5'
780 5' -57.1 NC_000852.3 + 210509 0.68 0.909304
Target:  5'- gCCGGugucuACCUGUacUCCUucgcccugAAGCCCGCUg -3'
miRNA:   3'- aGGCUu----UGGGCG--AGGA--------UUCGGGCGAg -5'
780 5' -57.1 NC_000852.3 + 219749 0.68 0.903455
Target:  5'- aUCUGAAGCUCGUUUCUGAGCaggagaagCGCaUCg -3'
miRNA:   3'- -AGGCUUUGGGCGAGGAUUCGg-------GCG-AG- -5'
780 5' -57.1 NC_000852.3 + 138189 0.69 0.891131
Target:  5'- uUCU---GCCCGCaUCCUGAGCCC-UUCu -3'
miRNA:   3'- -AGGcuuUGGGCG-AGGAUUCGGGcGAG- -5'
780 5' -57.1 NC_000852.3 + 220976 0.69 0.856809
Target:  5'- -aCGAAAUCUGC-CCUucggagacuucAAGUCCGCUCu -3'
miRNA:   3'- agGCUUUGGGCGaGGA-----------UUCGGGCGAG- -5'
780 5' -57.1 NC_000852.3 + 188893 0.69 0.856809
Target:  5'- aCCuAAACCCGCaCCUAAaCCCGCa- -3'
miRNA:   3'- aGGcUUUGGGCGaGGAUUcGGGCGag -5'
780 5' -57.1 NC_000852.3 + 329362 0.69 0.856809
Target:  5'- cUuuGGGcUCCGCUCCUGgucgaacaugGGCuCCGCUCc -3'
miRNA:   3'- -AggCUUuGGGCGAGGAU----------UCG-GGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.