miRNA display CGI


Results 1 - 20 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7806 5' -58.2 NC_001973.1 + 6895 0.66 0.85825
Target:  5'- aGCGCcacACUCGCGGccaguccaagaacgCgcuguggaacgCGCUGCGCCu -3'
miRNA:   3'- aCGCGu--UGAGCGCUa-------------Ga----------GCGGCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 57987 0.66 0.855222
Target:  5'- gUGCGCcACUCGaaaGGuccUCUC-CUGCGCg -3'
miRNA:   3'- -ACGCGuUGAGCg--CU---AGAGcGGCGCGg -5'
7806 5' -58.2 NC_001973.1 + 73417 0.66 0.855222
Target:  5'- uUGUGUAAaUCGCGcaaaauaacCUCGCaCGCGUCg -3'
miRNA:   3'- -ACGCGUUgAGCGCua-------GAGCG-GCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 94882 0.66 0.855222
Target:  5'- cGCGUGGCUCGaaaacaaccGUCcCGCCGaGCCg -3'
miRNA:   3'- aCGCGUUGAGCgc-------UAGaGCGGCgCGG- -5'
7806 5' -58.2 NC_001973.1 + 100376 0.66 0.855222
Target:  5'- cGaCGUAGCcUCGCGcg-UCGCCGC-CCa -3'
miRNA:   3'- aC-GCGUUG-AGCGCuagAGCGGCGcGG- -5'
7806 5' -58.2 NC_001973.1 + 105319 0.66 0.855222
Target:  5'- cGauCAGgUCGCGAUCgaccuccuUCGCCGUGUUg -3'
miRNA:   3'- aCgcGUUgAGCGCUAG--------AGCGGCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 136679 0.66 0.855222
Target:  5'- aGCGCGAUcCGCacGAUCuguUCGUUggGCGCCu -3'
miRNA:   3'- aCGCGUUGaGCG--CUAG---AGCGG--CGCGG- -5'
7806 5' -58.2 NC_001973.1 + 144185 0.66 0.855222
Target:  5'- cGCGguGCUCGaauaccagcaGGcucUCgagCGCgGCGCCg -3'
miRNA:   3'- aCGCguUGAGCg---------CU---AGa--GCGgCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 151892 0.66 0.855222
Target:  5'- cGUaCGGCUCGU--UCUCggGCCGCGCg -3'
miRNA:   3'- aCGcGUUGAGCGcuAGAG--CGGCGCGg -5'
7806 5' -58.2 NC_001973.1 + 45953 0.66 0.85446
Target:  5'- gGCGC-GCUCuugacggcggccgGCGcgCUCGCCcugcugucgcugGUGCCg -3'
miRNA:   3'- aCGCGuUGAG-------------CGCuaGAGCGG------------CGCGG- -5'
7806 5' -58.2 NC_001973.1 + 71470 0.66 0.85446
Target:  5'- cGUGCAGCuguacaaUC-CGGUggUGCCGCGCUa -3'
miRNA:   3'- aCGCGUUG-------AGcGCUAgaGCGGCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 96183 0.66 0.850621
Target:  5'- uUGUGCAACaaauacagaagccggUCGCGGUgCgccaccagagUCGCCGCcCCg -3'
miRNA:   3'- -ACGCGUUG---------------AGCGCUA-G----------AGCGGCGcGG- -5'
7806 5' -58.2 NC_001973.1 + 42877 0.66 0.847516
Target:  5'- aGCgGCGGCgCGUGAUCUgcaGCgCGUGUCa -3'
miRNA:   3'- aCG-CGUUGaGCGCUAGAg--CG-GCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 25015 0.66 0.847516
Target:  5'- cGaCGCGACUCGg---CUUGCgCGCGCa -3'
miRNA:   3'- aC-GCGUUGAGCgcuaGAGCG-GCGCGg -5'
7806 5' -58.2 NC_001973.1 + 48713 0.66 0.847516
Target:  5'- aGCGCGcGCUCGa-GUCgUGCuUGCGCCg -3'
miRNA:   3'- aCGCGU-UGAGCgcUAGaGCG-GCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 46407 0.66 0.847516
Target:  5'- cGCGCGACgaCGaCGA-CUCGgaCGCGaCCa -3'
miRNA:   3'- aCGCGUUGa-GC-GCUaGAGCg-GCGC-GG- -5'
7806 5' -58.2 NC_001973.1 + 61199 0.66 0.847516
Target:  5'- cGCGC-GCUCggGCGGg--CGCCgGCGCUc -3'
miRNA:   3'- aCGCGuUGAG--CGCUagaGCGG-CGCGG- -5'
7806 5' -58.2 NC_001973.1 + 136768 0.66 0.84042
Target:  5'- uUGCGCAcGCUCGUcguguacucGGUCUCGacgggaaagauguagCGCGUCa -3'
miRNA:   3'- -ACGCGU-UGAGCG---------CUAGAGCg--------------GCGCGG- -5'
7806 5' -58.2 NC_001973.1 + 100286 0.66 0.839622
Target:  5'- cGCGCAAUUCGUuuUUgaaCGCCGCcucGUCg -3'
miRNA:   3'- aCGCGUUGAGCGcuAGa--GCGGCG---CGG- -5'
7806 5' -58.2 NC_001973.1 + 52801 0.66 0.839622
Target:  5'- cUGCGCGGCgaaCuCGggCUCGagCGCGCUg -3'
miRNA:   3'- -ACGCGUUGa--GcGCuaGAGCg-GCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.