miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7814 3' -65.5 NC_001973.1 + 74251 0.66 0.541466
Target:  5'- gCGCCUGCCcgaugUCGGCGgUgauguacguguggccGGCGCcgUGCg -3'
miRNA:   3'- gGCGGGCGG-----AGCCGCgA---------------CCGCG--ACGg -5'
7814 3' -65.5 NC_001973.1 + 82961 0.66 0.537768
Target:  5'- aCGCCCGCgUCGcCGCcGcCGCcGCCc -3'
miRNA:   3'- gGCGGGCGgAGCcGCGaCcGCGaCGG- -5'
7814 3' -65.5 NC_001973.1 + 49786 0.66 0.537768
Target:  5'- aUCGCCgGCCagaGGCGCUacGUGCagaGCCa -3'
miRNA:   3'- -GGCGGgCGGag-CCGCGAc-CGCGa--CGG- -5'
7814 3' -65.5 NC_001973.1 + 73798 0.66 0.537768
Target:  5'- uUCGCCagGCuCUCGacGCGCUcGGUGC-GCCc -3'
miRNA:   3'- -GGCGGg-CG-GAGC--CGCGA-CCGCGaCGG- -5'
7814 3' -65.5 NC_001973.1 + 32048 0.66 0.537768
Target:  5'- gCGCaUCGCgUugcCGGCGgU-GCGCUGCCa -3'
miRNA:   3'- gGCG-GGCGgA---GCCGCgAcCGCGACGG- -5'
7814 3' -65.5 NC_001973.1 + 53069 0.66 0.535
Target:  5'- gCGCCCGCCUguugaCGaGCGUcgcguaauucucgaUGuaGCUGUCg -3'
miRNA:   3'- gGCGGGCGGA-----GC-CGCG--------------ACcgCGACGG- -5'
7814 3' -65.5 NC_001973.1 + 35519 0.66 0.532238
Target:  5'- cUCGCCCGCCgacUGGUGUacauccauuacgugaUGGaCGUggaGCCg -3'
miRNA:   3'- -GGCGGGCGGa--GCCGCG---------------ACC-GCGa--CGG- -5'
7814 3' -65.5 NC_001973.1 + 21700 0.66 0.52948
Target:  5'- gCCGUCgGCUggucgaagugaaccgCGcCGCUGGCGUcGCCg -3'
miRNA:   3'- -GGCGGgCGGa--------------GCcGCGACCGCGaCGG- -5'
7814 3' -65.5 NC_001973.1 + 6936 0.66 0.528562
Target:  5'- gCGCUgCGCCUggacCGGCGCacGGCcuccgGCUGCUc -3'
miRNA:   3'- gGCGG-GCGGA----GCCGCGa-CCG-----CGACGG- -5'
7814 3' -65.5 NC_001973.1 + 23568 0.66 0.528562
Target:  5'- -aGCCgGCCggCGGaCGCgccgcccGCGCUGCg -3'
miRNA:   3'- ggCGGgCGGa-GCC-GCGac-----CGCGACGg -5'
7814 3' -65.5 NC_001973.1 + 5924 0.66 0.528562
Target:  5'- gUCGCCCGCggUCGcGCGCacgauGCGCgacgcgGCCg -3'
miRNA:   3'- -GGCGGGCGg-AGC-CGCGac---CGCGa-----CGG- -5'
7814 3' -65.5 NC_001973.1 + 10993 0.66 0.528562
Target:  5'- gCGCUgGCgUucuuggcuaugaUGGCGacCUGGCGCUGCg -3'
miRNA:   3'- gGCGGgCGgA------------GCCGC--GACCGCGACGg -5'
7814 3' -65.5 NC_001973.1 + 73539 0.66 0.528562
Target:  5'- gUGCUCGUagUCGGCGUUGGaccgcaCGCgGCCc -3'
miRNA:   3'- gGCGGGCGg-AGCCGCGACC------GCGaCGG- -5'
7814 3' -65.5 NC_001973.1 + 144619 0.66 0.528562
Target:  5'- aUCGCCaCGUCgacaacaaGGUGaUGGUGCUGUCg -3'
miRNA:   3'- -GGCGG-GCGGag------CCGCgACCGCGACGG- -5'
7814 3' -65.5 NC_001973.1 + 7607 0.66 0.528562
Target:  5'- cCCGCCuuuucgcgcaCGCC-CGaGCaGCUGcGCGCgcucGCCg -3'
miRNA:   3'- -GGCGG----------GCGGaGC-CG-CGAC-CGCGa---CGG- -5'
7814 3' -65.5 NC_001973.1 + 75264 0.66 0.528562
Target:  5'- cCCGCCUGCUcgaCGG-GCUcuuggagaaGCGCUGCUa -3'
miRNA:   3'- -GGCGGGCGGa--GCCgCGAc--------CGCGACGG- -5'
7814 3' -65.5 NC_001973.1 + 109122 0.66 0.519415
Target:  5'- aCCG-CCGCggCGGCgGCcucuugGGCGCcGCCu -3'
miRNA:   3'- -GGCgGGCGgaGCCG-CGa-----CCGCGaCGG- -5'
7814 3' -65.5 NC_001973.1 + 31348 0.66 0.519415
Target:  5'- gCGCCCGCgCUCuGCG-UGGuCGCcGCg -3'
miRNA:   3'- gGCGGGCG-GAGcCGCgACC-GCGaCGg -5'
7814 3' -65.5 NC_001973.1 + 123229 0.66 0.519415
Target:  5'- gUCGUCCGgCUCGGCGUcccGCcGUUGCg -3'
miRNA:   3'- -GGCGGGCgGAGCCGCGac-CG-CGACGg -5'
7814 3' -65.5 NC_001973.1 + 121650 0.66 0.519415
Target:  5'- gCGCgCCGCCUCgaagGGCGCgucgcucgcGGCGC--CCg -3'
miRNA:   3'- gGCG-GGCGGAG----CCGCGa--------CCGCGacGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.