miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7814 5' -53.7 NC_001973.1 + 69427 0.66 0.973426
Target:  5'- cCGGCGuCGUUGcGCGUCucguGGUCGGu- -3'
miRNA:   3'- cGCCGC-GCAGU-CGCAGuu--CCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 56538 0.66 0.973426
Target:  5'- gGCGGgGCGggcUCGGCGcCGAGcUCGAu- -3'
miRNA:   3'- -CGCCgCGC---AGUCGCaGUUCcAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 12120 0.66 0.973426
Target:  5'- gGCGGaCGCGUaggauuuuacGCGUCugccGGGGUCAAu- -3'
miRNA:   3'- -CGCC-GCGCAgu--------CGCAG----UUCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 14352 0.66 0.973426
Target:  5'- uUGGCGUgGUCGGCGU---GGUCGAc- -3'
miRNA:   3'- cGCCGCG-CAGUCGCAguuCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 68945 0.66 0.973426
Target:  5'- --cGUGC-UCGGCGUCGAGcgcGUCGAAGu -3'
miRNA:   3'- cgcCGCGcAGUCGCAGUUC---CAGUUUC- -5'
7814 5' -53.7 NC_001973.1 + 151359 0.66 0.973426
Target:  5'- gGCGGaCGCGUaggaucuuacGCGUCGgccgGGGUCGucuGAGg -3'
miRNA:   3'- -CGCC-GCGCAgu--------CGCAGU----UCCAGU---UUC- -5'
7814 5' -53.7 NC_001973.1 + 151320 0.66 0.967607
Target:  5'- gGCGGaCGUGUaGGacCGUCaAAGGUCAGAu -3'
miRNA:   3'- -CGCC-GCGCAgUC--GCAG-UUCCAGUUUc -5'
7814 5' -53.7 NC_001973.1 + 38512 0.66 0.967607
Target:  5'- cGCGGUgagGCGgcaCAGCG-CGAGGccgucgCAAAGg -3'
miRNA:   3'- -CGCCG---CGCa--GUCGCaGUUCCa-----GUUUC- -5'
7814 5' -53.7 NC_001973.1 + 15349 0.66 0.967607
Target:  5'- aGCGGCGCGgcguugCGGUGUCGuacacgaacacGGGcUUGAAa -3'
miRNA:   3'- -CGCCGCGCa-----GUCGCAGU-----------UCC-AGUUUc -5'
7814 5' -53.7 NC_001973.1 + 21552 0.66 0.964382
Target:  5'- -gGGCGCGccgugguccCGGCGcgCGGGGUUGAAGu -3'
miRNA:   3'- cgCCGCGCa--------GUCGCa-GUUCCAGUUUC- -5'
7814 5' -53.7 NC_001973.1 + 123025 0.66 0.960939
Target:  5'- -gGGCGcCGcCAGCGUCGAGuccagucuGUCGAc- -3'
miRNA:   3'- cgCCGC-GCaGUCGCAGUUC--------CAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 81189 0.66 0.960939
Target:  5'- gGCGGCgGCGaCGGUGUU--GGUCAGc- -3'
miRNA:   3'- -CGCCG-CGCaGUCGCAGuuCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 146112 0.66 0.960939
Target:  5'- cGCGGCGCugagccggcucGggAGCGggcCGGGGUCAAGc -3'
miRNA:   3'- -CGCCGCG-----------CagUCGCa--GUUCCAGUUUc -5'
7814 5' -53.7 NC_001973.1 + 35687 0.67 0.957272
Target:  5'- gGCGGCGCGguggCGGCGaugcgcgaCGAGGcgCGAu- -3'
miRNA:   3'- -CGCCGCGCa---GUCGCa-------GUUCCa-GUUuc -5'
7814 5' -53.7 NC_001973.1 + 130881 0.67 0.953376
Target:  5'- gGCGGaCGCGUaggauuuuacGCGUCGgcuaGGGUCGAu- -3'
miRNA:   3'- -CGCC-GCGCAgu--------CGCAGU----UCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 130783 0.67 0.953376
Target:  5'- gGCgGGCGCGUaggauuuuacGCGUCGgccgGGGUCGAu- -3'
miRNA:   3'- -CG-CCGCGCAgu--------CGCAGU----UCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 130548 0.67 0.953376
Target:  5'- gGCGGaCGCGUaagauuuuacGCGUCGgccgGGGUCGAu- -3'
miRNA:   3'- -CGCC-GCGCAgu--------CGCAGU----UCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 72129 0.67 0.953376
Target:  5'- gGCGGaCGCGUaggaucuuacGCGUCGgcaaAGGUCGAu- -3'
miRNA:   3'- -CGCC-GCGCAgu--------CGCAGU----UCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 21167 0.67 0.953376
Target:  5'- gGCGGaCGCGUaggauuuuacGCGUCGgccgGGGUCGAu- -3'
miRNA:   3'- -CGCC-GCGCAgu--------CGCAGU----UCCAGUUuc -5'
7814 5' -53.7 NC_001973.1 + 16524 0.67 0.953376
Target:  5'- gGCGGaCGCGUaagauuuuacGCGUCGgcuaGGGUCGAu- -3'
miRNA:   3'- -CGCC-GCGCAgu--------CGCAGU----UCCAGUUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.