miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7817 3' -53.4 NC_001973.1 + 98796 0.66 0.979498
Target:  5'- aUCGugugcCCGGCGCGau--GUCC-ACGCu -3'
miRNA:   3'- gAGCc----GGCCGCGCauuuUAGGaUGCG- -5'
7817 3' -53.4 NC_001973.1 + 47794 0.66 0.979498
Target:  5'- --aGGCCGGcCGCGccgg--CCgACGCg -3'
miRNA:   3'- gagCCGGCC-GCGCauuuuaGGaUGCG- -5'
7817 3' -53.4 NC_001973.1 + 22974 0.66 0.979498
Target:  5'- -gCGG-CGGCGCGccGAcgCCgACGCc -3'
miRNA:   3'- gaGCCgGCCGCGCauUUuaGGaUGCG- -5'
7817 3' -53.4 NC_001973.1 + 159164 0.66 0.977175
Target:  5'- aUUGGCCGGCGCc--AAGUUgaagaGCGCg -3'
miRNA:   3'- gAGCCGGCCGCGcauUUUAGga---UGCG- -5'
7817 3' -53.4 NC_001973.1 + 124460 0.66 0.977175
Target:  5'- --aGGCCGcCGCGUGcAAAUUCaucGCGCg -3'
miRNA:   3'- gagCCGGCcGCGCAU-UUUAGGa--UGCG- -5'
7817 3' -53.4 NC_001973.1 + 16901 0.66 0.976933
Target:  5'- uUCGcGCCGGCGgCGgcgg--CCUcucggcgGCGCa -3'
miRNA:   3'- gAGC-CGGCCGC-GCauuuuaGGA-------UGCG- -5'
7817 3' -53.4 NC_001973.1 + 27610 0.66 0.974664
Target:  5'- -aCGGCCGcCGCGUugacGAAgcaccgCCUGuCGCa -3'
miRNA:   3'- gaGCCGGCcGCGCAu---UUUa-----GGAU-GCG- -5'
7817 3' -53.4 NC_001973.1 + 53399 0.66 0.974664
Target:  5'- cCUCGcccGCCGGCaCGggcgGAGcgCCggGCGCg -3'
miRNA:   3'- -GAGC---CGGCCGcGCa---UUUuaGGa-UGCG- -5'
7817 3' -53.4 NC_001973.1 + 87099 0.66 0.974664
Target:  5'- -cCGuGCCGGCaCGUGuGcgCgUGCGCg -3'
miRNA:   3'- gaGC-CGGCCGcGCAUuUuaGgAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 158691 0.66 0.974664
Target:  5'- -gCGGCCGaGCGCGcgccuaCCgACGCc -3'
miRNA:   3'- gaGCCGGC-CGCGCauuuuaGGaUGCG- -5'
7817 3' -53.4 NC_001973.1 + 135631 0.66 0.974664
Target:  5'- gUUGGCCGGCaaGCGgaugg-CCUACu- -3'
miRNA:   3'- gAGCCGGCCG--CGCauuuuaGGAUGcg -5'
7817 3' -53.4 NC_001973.1 + 106699 0.66 0.973606
Target:  5'- uUUGGCgGGCGCGccguacucguAUCCgcACGCc -3'
miRNA:   3'- gAGCCGgCCGCGCauuu------UAGGa-UGCG- -5'
7817 3' -53.4 NC_001973.1 + 146946 0.66 0.971958
Target:  5'- gUCGGCCGaG-GUG-AAGAUgUUGCGCa -3'
miRNA:   3'- gAGCCGGC-CgCGCaUUUUAgGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 124730 0.66 0.971958
Target:  5'- -aCGGCCuGGacCGCGaGcgGUUCUGCGCc -3'
miRNA:   3'- gaGCCGG-CC--GCGCaUuuUAGGAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 124501 0.66 0.971958
Target:  5'- gCUCuGCCGGCGCugg----CCgACGCg -3'
miRNA:   3'- -GAGcCGGCCGCGcauuuuaGGaUGCG- -5'
7817 3' -53.4 NC_001973.1 + 57107 0.66 0.971107
Target:  5'- uUCGGCCGGCucaCGUAAAAguugaacagCUcgcaguugggcgauUGCGCg -3'
miRNA:   3'- gAGCCGGCCGc--GCAUUUUa--------GG--------------AUGCG- -5'
7817 3' -53.4 NC_001973.1 + 32577 0.66 0.970238
Target:  5'- gUCGGCuCGGCGCGcugcgacaCggACGCg -3'
miRNA:   3'- gAGCCG-GCCGCGCauuuuag-Ga-UGCG- -5'
7817 3' -53.4 NC_001973.1 + 9445 0.66 0.970238
Target:  5'- -gCGGCCGGCGCcucccAAAUCaaauaauugguggcgUUGCGCc -3'
miRNA:   3'- gaGCCGGCCGCGcau--UUUAG---------------GAUGCG- -5'
7817 3' -53.4 NC_001973.1 + 26169 0.66 0.969049
Target:  5'- uUCcGCCGGCGCGggcgcGUCgacgGCGCu -3'
miRNA:   3'- gAGcCGGCCGCGCauuu-UAGga--UGCG- -5'
7817 3' -53.4 NC_001973.1 + 87132 0.66 0.969049
Target:  5'- -gCGcGCCGGUGCGccg---CCUGCuGCa -3'
miRNA:   3'- gaGC-CGGCCGCGCauuuuaGGAUG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.