miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7818 3' -56.9 NC_001973.1 + 10809 0.66 0.913401
Target:  5'- cCGaCGGCGGCGAGaauCGCCa--CGAGg -3'
miRNA:   3'- aGCaGCCGUUGCUCg--GCGGcaaGCUC- -5'
7818 3' -56.9 NC_001973.1 + 4964 0.66 0.913401
Target:  5'- ---aCGGCAcgGCGAGCCGgUCGUgCGAc -3'
miRNA:   3'- agcaGCCGU--UGCUCGGC-GGCAaGCUc -5'
7818 3' -56.9 NC_001973.1 + 137537 0.66 0.913401
Target:  5'- uUUGuUCGGCGACGGcCCGUCGUacgucgucgCGAGc -3'
miRNA:   3'- -AGC-AGCCGUUGCUcGGCGGCAa--------GCUC- -5'
7818 3' -56.9 NC_001973.1 + 45364 0.66 0.907516
Target:  5'- cUCGUCGuGCAgu-AGCCGCCuugcUCGAGc -3'
miRNA:   3'- -AGCAGC-CGUugcUCGGCGGca--AGCUC- -5'
7818 3' -56.9 NC_001973.1 + 53373 0.66 0.907516
Target:  5'- gUCGaCGGCGACGAcgcccGCCGCCuccUCGc- -3'
miRNA:   3'- -AGCaGCCGUUGCU-----CGGCGGca-AGCuc -5'
7818 3' -56.9 NC_001973.1 + 136645 0.66 0.907516
Target:  5'- cUCcUCGGCGAacAGCCGCUGggCGuAGg -3'
miRNA:   3'- -AGcAGCCGUUgcUCGGCGGCaaGC-UC- -5'
7818 3' -56.9 NC_001973.1 + 79289 0.66 0.901406
Target:  5'- --aUCGGCGACGAgGCCGUCGauuauuugUCaGAGu -3'
miRNA:   3'- agcAGCCGUUGCU-CGGCGGCa-------AG-CUC- -5'
7818 3' -56.9 NC_001973.1 + 55530 0.66 0.901406
Target:  5'- cUCGUCGaGCAGCGucgCGCCGUacaGGGa -3'
miRNA:   3'- -AGCAGC-CGUUGCucgGCGGCAag-CUC- -5'
7818 3' -56.9 NC_001973.1 + 23485 0.66 0.901406
Target:  5'- -aGUCGGCccaAACGAacGCCGCCcUcaaccagaugaUCGAGg -3'
miRNA:   3'- agCAGCCG---UUGCU--CGGCGGcA-----------AGCUC- -5'
7818 3' -56.9 NC_001973.1 + 98344 0.66 0.900783
Target:  5'- gCGgCGGCGGCGcgcguucGGCCGCU-UUCGGGc -3'
miRNA:   3'- aGCaGCCGUUGC-------UCGGCGGcAAGCUC- -5'
7818 3' -56.9 NC_001973.1 + 6417 0.66 0.895073
Target:  5'- gCG-CGGCGGCG-GCgCGCCGa-CGAGc -3'
miRNA:   3'- aGCaGCCGUUGCuCG-GCGGCaaGCUC- -5'
7818 3' -56.9 NC_001973.1 + 125424 0.66 0.895073
Target:  5'- uUCGUCauaaAGCGGGCCGCCGUcCa-- -3'
miRNA:   3'- -AGCAGccg-UUGCUCGGCGGCAaGcuc -5'
7818 3' -56.9 NC_001973.1 + 20153 0.66 0.895073
Target:  5'- aUGUCGGCcauucgguuGGCGAGCUggGCCGUUUc-- -3'
miRNA:   3'- aGCAGCCG---------UUGCUCGG--CGGCAAGcuc -5'
7818 3' -56.9 NC_001973.1 + 43749 0.66 0.88852
Target:  5'- gCGUCGGUGACGAucucccugacGCgCGCCGcgcUCGGu -3'
miRNA:   3'- aGCAGCCGUUGCU----------CG-GCGGCa--AGCUc -5'
7818 3' -56.9 NC_001973.1 + 133453 0.66 0.886511
Target:  5'- -aGUCGGCGcGCGGGUCGCgcacggagcgccagCGggCGAGc -3'
miRNA:   3'- agCAGCCGU-UGCUCGGCG--------------GCaaGCUC- -5'
7818 3' -56.9 NC_001973.1 + 140372 0.66 0.88175
Target:  5'- gUCGUCGcCGcCGAGCgGCUGgcucUCGAGc -3'
miRNA:   3'- -AGCAGCcGUuGCUCGgCGGCa---AGCUC- -5'
7818 3' -56.9 NC_001973.1 + 55425 0.66 0.88175
Target:  5'- uUCGUCGGCGgcgGCGGGCCcgaCGgcgCGGc -3'
miRNA:   3'- -AGCAGCCGU---UGCUCGGcg-GCaa-GCUc -5'
7818 3' -56.9 NC_001973.1 + 17820 0.66 0.88175
Target:  5'- cUCGUUGaGCGACGcGCCGUCGa--GGGu -3'
miRNA:   3'- -AGCAGC-CGUUGCuCGGCGGCaagCUC- -5'
7818 3' -56.9 NC_001973.1 + 9127 0.66 0.881061
Target:  5'- cUCGcacaCGGCGAUGAucgacgaggcgucGCCGUCGUUCGu- -3'
miRNA:   3'- -AGCa---GCCGUUGCU-------------CGGCGGCAAGCuc -5'
7818 3' -56.9 NC_001973.1 + 158829 0.67 0.874767
Target:  5'- cCGgCGGCcgagcgcgcgGACGAGCCGCCcaaacCGAGc -3'
miRNA:   3'- aGCaGCCG----------UUGCUCGGCGGcaa--GCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.