miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7818 5' -55.6 NC_001973.1 + 124339 0.66 0.931101
Target:  5'- --gCCGACGuGGCGGC-CGUccUGCAGAg -3'
miRNA:   3'- ccgGGCUGC-CCGUUGcGCA--ACGUUUa -5'
7818 5' -55.6 NC_001973.1 + 117550 0.66 0.931101
Target:  5'- cGUCCGACGcGGaCGACGac-UGCGAGUg -3'
miRNA:   3'- cCGGGCUGC-CC-GUUGCgcaACGUUUA- -5'
7818 5' -55.6 NC_001973.1 + 95847 0.66 0.931101
Target:  5'- gGGCCCGGugcCGGGC-ACGUGggaggacgGCGu-- -3'
miRNA:   3'- -CCGGGCU---GCCCGuUGCGCaa------CGUuua -5'
7818 5' -55.6 NC_001973.1 + 9098 0.66 0.931101
Target:  5'- aGCUCGGCGcGCAuccgcgcCGCGUUGCGc-- -3'
miRNA:   3'- cCGGGCUGCcCGUu------GCGCAACGUuua -5'
7818 5' -55.6 NC_001973.1 + 5880 0.66 0.931101
Target:  5'- aGGCUgGuGCGGcGCAGCGCGc-GCGAc- -3'
miRNA:   3'- -CCGGgC-UGCC-CGUUGCGCaaCGUUua -5'
7818 5' -55.6 NC_001973.1 + 35427 0.66 0.925835
Target:  5'- cGCUCGACGcGCAACGCGcgGUc--- -3'
miRNA:   3'- cCGGGCUGCcCGUUGCGCaaCGuuua -5'
7818 5' -55.6 NC_001973.1 + 81047 0.66 0.925835
Target:  5'- gGGCCgcguCGACGGGCGuGCGCuucaGUUGgGAc- -3'
miRNA:   3'- -CCGG----GCUGCCCGU-UGCG----CAACgUUua -5'
7818 5' -55.6 NC_001973.1 + 6973 0.66 0.920327
Target:  5'- cGCCCGAacaGGGCcGC-CGcgGCAAAa -3'
miRNA:   3'- cCGGGCUg--CCCGuUGcGCaaCGUUUa -5'
7818 5' -55.6 NC_001973.1 + 30806 0.66 0.920327
Target:  5'- cGCCCGAgGGGUugGugGCGUcGUuGAUc -3'
miRNA:   3'- cCGGGCUgCCCG--UugCGCAaCGuUUA- -5'
7818 5' -55.6 NC_001973.1 + 61103 0.66 0.920327
Target:  5'- cGG-CCGACGGaGCAGCggcgGCGggGCGc-- -3'
miRNA:   3'- -CCgGGCUGCC-CGUUG----CGCaaCGUuua -5'
7818 5' -55.6 NC_001973.1 + 72124 0.66 0.920327
Target:  5'- aGCUCGGCGGacGCGuaggaucuuACGCGUcgGCAAAg -3'
miRNA:   3'- cCGGGCUGCC--CGU---------UGCGCAa-CGUUUa -5'
7818 5' -55.6 NC_001973.1 + 113221 0.66 0.91458
Target:  5'- cGCCgcguaGACGGGCuuCGCGUcGCu--- -3'
miRNA:   3'- cCGGg----CUGCCCGuuGCGCAaCGuuua -5'
7818 5' -55.6 NC_001973.1 + 64114 0.66 0.91458
Target:  5'- cGGCUCGACGGGgCggUGCc--GCAu-- -3'
miRNA:   3'- -CCGGGCUGCCC-GuuGCGcaaCGUuua -5'
7818 5' -55.6 NC_001973.1 + 55956 0.66 0.91458
Target:  5'- gGGCCCGuucuguCGGGagaGGCGCGcgacgacGCGAAa -3'
miRNA:   3'- -CCGGGCu-----GCCCg--UUGCGCaa-----CGUUUa -5'
7818 5' -55.6 NC_001973.1 + 96682 0.66 0.911016
Target:  5'- uGGCCCGAaaCGGGCGaggacauccccgacgAgGCGUgucgGCGc-- -3'
miRNA:   3'- -CCGGGCU--GCCCGU---------------UgCGCAa---CGUuua -5'
7818 5' -55.6 NC_001973.1 + 137778 0.66 0.908593
Target:  5'- cGGCCagcagGugGGGCAccAUGCucucGUUGCAGu- -3'
miRNA:   3'- -CCGGg----CugCCCGU--UGCG----CAACGUUua -5'
7818 5' -55.6 NC_001973.1 + 17270 0.66 0.908593
Target:  5'- cGGCCgCGcacuCGGGCAuCGCGUcGUAc-- -3'
miRNA:   3'- -CCGG-GCu---GCCCGUuGCGCAaCGUuua -5'
7818 5' -55.6 NC_001973.1 + 53402 0.66 0.908593
Target:  5'- cGCCCGccggcACGGGCGgagcgccggGCGCGUcgaaGCAGu- -3'
miRNA:   3'- cCGGGC-----UGCCCGU---------UGCGCAa---CGUUua -5'
7818 5' -55.6 NC_001973.1 + 73695 0.66 0.902369
Target:  5'- gGGCCCcgccgcgcagucGACGGGCG-CGcCGUcGUAAAa -3'
miRNA:   3'- -CCGGG------------CUGCCCGUuGC-GCAaCGUUUa -5'
7818 5' -55.6 NC_001973.1 + 7268 0.66 0.902369
Target:  5'- gGGCUCGGCGcGCGGCGCGcccGCu--- -3'
miRNA:   3'- -CCGGGCUGCcCGUUGCGCaa-CGuuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.