miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7841 5' -55.3 NC_001973.1 + 137005 0.66 0.959911
Target:  5'- uCGAGCGcGUGCGCcGGGuCGCcgaaGCG-CCu -3'
miRNA:   3'- -GCUUGCaCAUGUGcCCC-GCG----UGCaGG- -5'
7841 5' -55.3 NC_001973.1 + 123879 0.66 0.959911
Target:  5'- gGGACGacgGCACGcuGGUGCACGUgCu -3'
miRNA:   3'- gCUUGCacaUGUGCc-CCGCGUGCAgG- -5'
7841 5' -55.3 NC_001973.1 + 110852 0.66 0.956276
Target:  5'- cCGGcccACgGUGUACGCGugccGGCGCGCGgaCCu -3'
miRNA:   3'- -GCU---UG-CACAUGUGCc---CCGCGUGCa-GG- -5'
7841 5' -55.3 NC_001973.1 + 123563 0.66 0.956276
Target:  5'- --cACGUGUACAUGaGGGUucggucGCACGcgugcaucguuUCCg -3'
miRNA:   3'- gcuUGCACAUGUGC-CCCG------CGUGC-----------AGG- -5'
7841 5' -55.3 NC_001973.1 + 70137 0.66 0.956276
Target:  5'- uCGAGCaugGUGCGCaGcGCGUccGCGUCCg -3'
miRNA:   3'- -GCUUGca-CAUGUGcCcCGCG--UGCAGG- -5'
7841 5' -55.3 NC_001973.1 + 106889 0.66 0.951626
Target:  5'- cCGAAcCGUGcGCGCGGcaaucgaccgaaGCGCGCGUgCg -3'
miRNA:   3'- -GCUU-GCACaUGUGCCc-----------CGCGUGCAgG- -5'
7841 5' -55.3 NC_001973.1 + 109379 0.66 0.948348
Target:  5'- aCGAGCGccucGUAgGCGcGGCGCACuugCCu -3'
miRNA:   3'- -GCUUGCa---CAUgUGCcCCGCGUGca-GG- -5'
7841 5' -55.3 NC_001973.1 + 44760 0.66 0.948348
Target:  5'- uGAACGcgGUGC-CGGGGCacagcgguuuGCugGCGUCg -3'
miRNA:   3'- gCUUGCa-CAUGuGCCCCG----------CG--UGCAGg -5'
7841 5' -55.3 NC_001973.1 + 89754 0.66 0.944049
Target:  5'- --cACGU-UGCGC-GGGUGCAgGUCCa -3'
miRNA:   3'- gcuUGCAcAUGUGcCCCGCGUgCAGG- -5'
7841 5' -55.3 NC_001973.1 + 8281 0.66 0.944049
Target:  5'- uGGACGacugcggcuuccUGUACACGGcGGCGgagGCG-CCg -3'
miRNA:   3'- gCUUGC------------ACAUGUGCC-CCGCg--UGCaGG- -5'
7841 5' -55.3 NC_001973.1 + 36130 0.66 0.939522
Target:  5'- gCGGACGaauaucUGUacgGCAUGGGcagcGCGCugGUCg -3'
miRNA:   3'- -GCUUGC------ACA---UGUGCCC----CGCGugCAGg -5'
7841 5' -55.3 NC_001973.1 + 107231 0.67 0.936696
Target:  5'- uGAACGUGUcguacucgcgcaaaaGCACGcGcGCGgCGCGUCg -3'
miRNA:   3'- gCUUGCACA---------------UGUGCcC-CGC-GUGCAGg -5'
7841 5' -55.3 NC_001973.1 + 49270 0.67 0.934766
Target:  5'- aCGAccACGc-UGCACGcGGCGCugGUCa -3'
miRNA:   3'- -GCU--UGCacAUGUGCcCCGCGugCAGg -5'
7841 5' -55.3 NC_001973.1 + 70998 0.67 0.934278
Target:  5'- aGAGCcugGUGaaccacaaaacccUGgGCGcGGCGCGCGUCCu -3'
miRNA:   3'- gCUUG---CAC-------------AUgUGCcCCGCGUGCAGG- -5'
7841 5' -55.3 NC_001973.1 + 53492 0.67 0.931802
Target:  5'- aGAACGggaagcggucgguguUGUACACGGccGCGC-CGUCg -3'
miRNA:   3'- gCUUGC---------------ACAUGUGCCc-CGCGuGCAGg -5'
7841 5' -55.3 NC_001973.1 + 124742 0.67 0.929268
Target:  5'- gCGAGCG-GUucugcgccacaacGCGCGGuGcGCGCGCGcUCUg -3'
miRNA:   3'- -GCUUGCaCA-------------UGUGCC-C-CGCGUGC-AGG- -5'
7841 5' -55.3 NC_001973.1 + 94720 0.67 0.913434
Target:  5'- uGGGCGaGgcgGC-CGGcaaGCGCGCGUCCg -3'
miRNA:   3'- gCUUGCaCa--UGuGCCc--CGCGUGCAGG- -5'
7841 5' -55.3 NC_001973.1 + 45643 0.67 0.907525
Target:  5'- uCGAGCGcggcgucGUACGCGGccUGCGCGUCUc -3'
miRNA:   3'- -GCUUGCa------CAUGUGCCccGCGUGCAGG- -5'
7841 5' -55.3 NC_001973.1 + 146769 0.68 0.895029
Target:  5'- gCGGGCGUGcaaGCGGGGauugguggcgaGCACGccuUCCa -3'
miRNA:   3'- -GCUUGCACaugUGCCCCg----------CGUGC---AGG- -5'
7841 5' -55.3 NC_001973.1 + 118099 0.68 0.894381
Target:  5'- uGGGCGUGacgguggGCGCGGcgcucaagcagguGGCGCGCGagCCc -3'
miRNA:   3'- gCUUGCACa------UGUGCC-------------CCGCGUGCa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.