miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7849 3' -57.8 NC_001973.1 + 66211 0.66 0.869889
Target:  5'- aGAUCGccgacacGGAcggcGCGCA-CCUCGACCcgcuGCCg -3'
miRNA:   3'- -CUAGCu------CCU----CGCGUcGGAGCUGG----UGG- -5'
7849 3' -57.8 NC_001973.1 + 125126 0.66 0.869889
Target:  5'- -uUCGaAGGGGCGCcgAGCUgccgcgcaacuUUGGCCACg -3'
miRNA:   3'- cuAGC-UCCUCGCG--UCGG-----------AGCUGGUGg -5'
7849 3' -57.8 NC_001973.1 + 156937 0.66 0.867706
Target:  5'- ----uAGGGGCaaGCAGUCcauuucggccgcguUCGACCACCa -3'
miRNA:   3'- cuagcUCCUCG--CGUCGG--------------AGCUGGUGG- -5'
7849 3' -57.8 NC_001973.1 + 109900 0.66 0.862539
Target:  5'- gGAggGAGG-GCGCGGCCauccgcgcgUUGAUCACg -3'
miRNA:   3'- -CUagCUCCuCGCGUCGG---------AGCUGGUGg -5'
7849 3' -57.8 NC_001973.1 + 118179 0.66 0.862539
Target:  5'- uGUCGAGcGAGCgGCGGCgCgUGAUCugCa -3'
miRNA:   3'- cUAGCUC-CUCG-CGUCG-GaGCUGGugG- -5'
7849 3' -57.8 NC_001973.1 + 132404 0.66 0.860295
Target:  5'- --gCGAGuccugcagcugcgcGAGCGCGGCgUCGAgCGCg -3'
miRNA:   3'- cuaGCUC--------------CUCGCGUCGgAGCUgGUGg -5'
7849 3' -57.8 NC_001973.1 + 89916 0.66 0.854989
Target:  5'- cGUCGAGGAGCaggagGCGGUCUgcaaGGCgCugCa -3'
miRNA:   3'- cUAGCUCCUCG-----CGUCGGAg---CUG-GugG- -5'
7849 3' -57.8 NC_001973.1 + 51908 0.66 0.854989
Target:  5'- -cUCuuGG-GCGCcGCCUCGACgaGCCg -3'
miRNA:   3'- cuAGcuCCuCGCGuCGGAGCUGg-UGG- -5'
7849 3' -57.8 NC_001973.1 + 78010 0.66 0.854989
Target:  5'- cGggCGAGGcGGCGCgcccgucgAGCCcgCGGCCuCCu -3'
miRNA:   3'- -CuaGCUCC-UCGCG--------UCGGa-GCUGGuGG- -5'
7849 3' -57.8 NC_001973.1 + 86483 0.66 0.854989
Target:  5'- cAUUGuGGGAuGCGCGGCggcggcgucgucCUCGuCCGCCa -3'
miRNA:   3'- cUAGC-UCCU-CGCGUCG------------GAGCuGGUGG- -5'
7849 3' -57.8 NC_001973.1 + 36681 0.66 0.854223
Target:  5'- -cUCGAGacgauuucggacaGGGCGCAGCgCgcCGGCCGCg -3'
miRNA:   3'- cuAGCUC-------------CUCGCGUCG-Ga-GCUGGUGg -5'
7849 3' -57.8 NC_001973.1 + 981 0.66 0.847244
Target:  5'- uGGUCGAGGcuGCGCu-CCUCGAUCucguGCUg -3'
miRNA:   3'- -CUAGCUCCu-CGCGucGGAGCUGG----UGG- -5'
7849 3' -57.8 NC_001973.1 + 86913 0.66 0.847244
Target:  5'- cGUCGGGGAauugcGCGCAGCgagagUCGcCCGCg -3'
miRNA:   3'- cUAGCUCCU-----CGCGUCGg----AGCuGGUGg -5'
7849 3' -57.8 NC_001973.1 + 117325 0.66 0.847244
Target:  5'- --gUGAGGaAGCGCuGCUcgauggCGACCGCg -3'
miRNA:   3'- cuaGCUCC-UCGCGuCGGa-----GCUGGUGg -5'
7849 3' -57.8 NC_001973.1 + 75499 0.66 0.847244
Target:  5'- --aCGcGGAgGCGguGCaCUCGAUCugCa -3'
miRNA:   3'- cuaGCuCCU-CGCguCG-GAGCUGGugG- -5'
7849 3' -57.8 NC_001973.1 + 108334 0.66 0.847244
Target:  5'- aGUCGAGccGcCGCAG-CUCGAgCGCCa -3'
miRNA:   3'- cUAGCUCcuC-GCGUCgGAGCUgGUGG- -5'
7849 3' -57.8 NC_001973.1 + 60676 0.66 0.839311
Target:  5'- -cUCGAcGA-CGUAGCCUCGcgcgucGCCGCCc -3'
miRNA:   3'- cuAGCUcCUcGCGUCGGAGC------UGGUGG- -5'
7849 3' -57.8 NC_001973.1 + 153798 0.66 0.839311
Target:  5'- cGUCGAGcaGAuGCGCAGCgggCUCGGCgCGCg -3'
miRNA:   3'- cUAGCUC--CU-CGCGUCG---GAGCUG-GUGg -5'
7849 3' -57.8 NC_001973.1 + 36243 0.66 0.831196
Target:  5'- --gCGAGGGcCGgGGCCUCGAUCGg- -3'
miRNA:   3'- cuaGCUCCUcGCgUCGGAGCUGGUgg -5'
7849 3' -57.8 NC_001973.1 + 110965 0.66 0.831196
Target:  5'- -uUCGAGGGGCgGCGGCgccaCGgagggcggcggcGCCGCCg -3'
miRNA:   3'- cuAGCUCCUCG-CGUCGga--GC------------UGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.