miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7901 5' -53 NC_001973.1 + 44444 0.66 0.981975
Target:  5'- gGGCGCUcgGGCGcgggcGCUcgGGGAUCGaacggGCGCu -3'
miRNA:   3'- -UCGCGAaaCUGC-----CGG--UUCUAGC-----UGCG- -5'
7901 5' -53 NC_001973.1 + 145011 0.66 0.981975
Target:  5'- uGGCgGCUccGGCGGCgccCGAGugCGGCGCg -3'
miRNA:   3'- -UCG-CGAaaCUGCCG---GUUCuaGCUGCG- -5'
7901 5' -53 NC_001973.1 + 95716 0.66 0.981975
Target:  5'- cGGCGCggUGcgcCGGCU---GUUGGCGCa -3'
miRNA:   3'- -UCGCGaaACu--GCCGGuucUAGCUGCG- -5'
7901 5' -53 NC_001973.1 + 1369 0.66 0.981975
Target:  5'- cAGCGCgcguccGGCGcgcGCCAAacucuaGUCGACGCu -3'
miRNA:   3'- -UCGCGaaa---CUGC---CGGUUc-----UAGCUGCG- -5'
7901 5' -53 NC_001973.1 + 4010 0.66 0.981975
Target:  5'- cGCGCUUgaACGcGCUGAGcgCG-CGCu -3'
miRNA:   3'- uCGCGAAacUGC-CGGUUCuaGCuGCG- -5'
7901 5' -53 NC_001973.1 + 31740 0.66 0.981975
Target:  5'- cAGCGCcggGugGGCCGugccgCGcGCGCu -3'
miRNA:   3'- -UCGCGaaaCugCCGGUucua-GC-UGCG- -5'
7901 5' -53 NC_001973.1 + 122634 0.66 0.981143
Target:  5'- gGGCGCcggcGuCGGUCGAGAgagcaccugaacgCGGCGCc -3'
miRNA:   3'- -UCGCGaaa-CuGCCGGUUCUa------------GCUGCG- -5'
7901 5' -53 NC_001973.1 + 111076 0.66 0.979842
Target:  5'- cGGCGCccgacGugGGCCGcgucgaggAGAgcgaCGACGUg -3'
miRNA:   3'- -UCGCGaaa--CugCCGGU--------UCUa---GCUGCG- -5'
7901 5' -53 NC_001973.1 + 157877 0.66 0.979619
Target:  5'- aGGCGCU---GCGGCUcgugucgGAGGUCGcggccgccGCGCc -3'
miRNA:   3'- -UCGCGAaacUGCCGG-------UUCUAGC--------UGCG- -5'
7901 5' -53 NC_001973.1 + 61683 0.66 0.977527
Target:  5'- cGGCGCgaa-GCGGC----GUCGGCGCg -3'
miRNA:   3'- -UCGCGaaacUGCCGguucUAGCUGCG- -5'
7901 5' -53 NC_001973.1 + 122583 0.66 0.977527
Target:  5'- gGGCGCcgguccgaaucUUUGcuGCGGCgGAGGcgUCGGCGg -3'
miRNA:   3'- -UCGCG-----------AAAC--UGCCGgUUCU--AGCUGCg -5'
7901 5' -53 NC_001973.1 + 117518 0.66 0.976047
Target:  5'- cGGCGCguagacuuccacGGCGGUgGGGGUgucgucCGACGCg -3'
miRNA:   3'- -UCGCGaaa---------CUGCCGgUUCUA------GCUGCG- -5'
7901 5' -53 NC_001973.1 + 26181 0.66 0.975021
Target:  5'- gGGCGCgucGACGGCgCuccaguugcGGAagGACGCc -3'
miRNA:   3'- -UCGCGaaaCUGCCG-Gu--------UCUagCUGCG- -5'
7901 5' -53 NC_001973.1 + 35155 0.66 0.975021
Target:  5'- -cCGC-UUGAUGGCgAcgcuGGcgCGACGCa -3'
miRNA:   3'- ucGCGaAACUGCCGgU----UCuaGCUGCG- -5'
7901 5' -53 NC_001973.1 + 42029 0.66 0.975021
Target:  5'- gAGCGUc--GACcuGGCCGAGGUgaGCGCg -3'
miRNA:   3'- -UCGCGaaaCUG--CCGGUUCUAgcUGCG- -5'
7901 5' -53 NC_001973.1 + 55206 0.66 0.975021
Target:  5'- gAGCGUguucucgacGACGGCgGAGG-CGGCGg -3'
miRNA:   3'- -UCGCGaaa------CUGCCGgUUCUaGCUGCg -5'
7901 5' -53 NC_001973.1 + 61201 0.66 0.975021
Target:  5'- cGCGCUcgGGCGGgCGc---CGGCGCu -3'
miRNA:   3'- uCGCGAaaCUGCCgGUucuaGCUGCG- -5'
7901 5' -53 NC_001973.1 + 131772 0.66 0.975021
Target:  5'- cGCGgUUgacgacGGCGGCCGgcucggugaaggGGccGUCGACGCc -3'
miRNA:   3'- uCGCgAAa-----CUGCCGGU------------UC--UAGCUGCG- -5'
7901 5' -53 NC_001973.1 + 137267 0.66 0.975021
Target:  5'- gAGUGUgc-GGCGGCgGGGcUCGGcCGCg -3'
miRNA:   3'- -UCGCGaaaCUGCCGgUUCuAGCU-GCG- -5'
7901 5' -53 NC_001973.1 + 109349 0.66 0.973964
Target:  5'- cGGCGCagcuccgcuCGGCCGuagcGGUCGACGa -3'
miRNA:   3'- -UCGCGaaacu----GCCGGUu---CUAGCUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.