miRNA display CGI


Results 1 - 20 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7911 3' -53 NC_001973.1 + 112757 0.66 0.979323
Target:  5'- ----gGCGaccgUGCgGCCGgcucgUCGACGCu -3'
miRNA:   3'- aaaaaUGCga--ACGgCGGCa----GGCUGCG- -5'
7911 3' -53 NC_001973.1 + 61201 0.66 0.979323
Target:  5'- ----cGCGCUcggGCgGgCG-CCGGCGCu -3'
miRNA:   3'- aaaaaUGCGAa--CGgCgGCaGGCUGCG- -5'
7911 3' -53 NC_001973.1 + 40733 0.66 0.979323
Target:  5'- ----cGCGCUcgcggagauggGUCGCCG-CgGACGCg -3'
miRNA:   3'- aaaaaUGCGAa----------CGGCGGCaGgCUGCG- -5'
7911 3' -53 NC_001973.1 + 5163 0.66 0.979323
Target:  5'- ------aGCUgGuuGgUGUCCGGCGCg -3'
miRNA:   3'- aaaaaugCGAaCggCgGCAGGCUGCG- -5'
7911 3' -53 NC_001973.1 + 8830 0.66 0.979323
Target:  5'- ------aGCccGcCCGCCGUCCcGCGCu -3'
miRNA:   3'- aaaaaugCGaaC-GGCGGCAGGcUGCG- -5'
7911 3' -53 NC_001973.1 + 35311 0.66 0.97695
Target:  5'- ----cACGUUcGCCGCCuUCCGcaaccugaugaACGCg -3'
miRNA:   3'- aaaaaUGCGAaCGGCGGcAGGC-----------UGCG- -5'
7911 3' -53 NC_001973.1 + 42461 0.66 0.97695
Target:  5'- ----cGCGCcga-CGCCGacgCCGACGCc -3'
miRNA:   3'- aaaaaUGCGaacgGCGGCa--GGCUGCG- -5'
7911 3' -53 NC_001973.1 + 61166 0.66 0.97695
Target:  5'- ----cGCGUcggGCgGUCG-CCGACGCu -3'
miRNA:   3'- aaaaaUGCGaa-CGgCGGCaGGCUGCG- -5'
7911 3' -53 NC_001973.1 + 120794 0.66 0.97695
Target:  5'- ----gGCGUgcGCgCGCUG-CUGACGCa -3'
miRNA:   3'- aaaaaUGCGaaCG-GCGGCaGGCUGCG- -5'
7911 3' -53 NC_001973.1 + 138555 0.66 0.97695
Target:  5'- ----cGCGCUcGCCGUCGUauuugacuucggCCaGCGCg -3'
miRNA:   3'- aaaaaUGCGAaCGGCGGCA------------GGcUGCG- -5'
7911 3' -53 NC_001973.1 + 151013 0.66 0.97695
Target:  5'- --aUUAUGauugUGCCuGCUGUCCGGCu- -3'
miRNA:   3'- aaaAAUGCga--ACGG-CGGCAGGCUGcg -5'
7911 3' -53 NC_001973.1 + 147810 0.66 0.976702
Target:  5'- ----gGCGaCUcguccuucgagacUGCCGCCG-CCGcCGCu -3'
miRNA:   3'- aaaaaUGC-GA-------------ACGGCGGCaGGCuGCG- -5'
7911 3' -53 NC_001973.1 + 59313 0.66 0.976702
Target:  5'- ----cGCGCUcGCCGCaacccgaccgagaCGUCaacuuCGACGCg -3'
miRNA:   3'- aaaaaUGCGAaCGGCG-------------GCAG-----GCUGCG- -5'
7911 3' -53 NC_001973.1 + 26157 0.66 0.974383
Target:  5'- ----cGCGUggGCCaguuCCG-CCGGCGCg -3'
miRNA:   3'- aaaaaUGCGaaCGGc---GGCaGGCUGCG- -5'
7911 3' -53 NC_001973.1 + 74365 0.66 0.974383
Target:  5'- ----gGCGCa--CCGCCGUCUGGcCGUu -3'
miRNA:   3'- aaaaaUGCGaacGGCGGCAGGCU-GCG- -5'
7911 3' -53 NC_001973.1 + 81948 0.66 0.974383
Target:  5'- ----gGCGCggagaagcGCUgGCCGUCCGAgUGCg -3'
miRNA:   3'- aaaaaUGCGaa------CGG-CGGCAGGCU-GCG- -5'
7911 3' -53 NC_001973.1 + 5946 0.66 0.974383
Target:  5'- ---aUGCGCgacGCgGCCGgCgGAUGCg -3'
miRNA:   3'- aaaaAUGCGaa-CGgCGGCaGgCUGCG- -5'
7911 3' -53 NC_001973.1 + 39406 0.66 0.974383
Target:  5'- ----cGCGCgccaggucgGCCGCgGUgaGGCGCg -3'
miRNA:   3'- aaaaaUGCGaa-------CGGCGgCAggCUGCG- -5'
7911 3' -53 NC_001973.1 + 59962 0.66 0.972746
Target:  5'- -gUUUGCGCcgauaggcaGCCGCCGggcccagaccgcggCCGGCGa -3'
miRNA:   3'- aaAAAUGCGaa-------CGGCGGCa-------------GGCUGCg -5'
7911 3' -53 NC_001973.1 + 25792 0.66 0.971614
Target:  5'- ----gACGC--GCCGCUccaCCGGCGCg -3'
miRNA:   3'- aaaaaUGCGaaCGGCGGca-GGCUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.