Results 1 - 20 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7911 | 5' | -58.7 | NC_001973.1 | + | 54807 | 0.66 | 0.840358 |
Target: 5'- cGGGCaGCuuGGACGCGUCCAcGUAucgaauguccucguCGGUg -3' miRNA: 3'- -UCCGcCG--CUUGCGCAGGU-CGUu-------------GCCG- -5' |
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7911 | 5' | -58.7 | NC_001973.1 | + | 4348 | 0.66 | 0.837166 |
Target: 5'- cGGCGGCcguGAuCGUauaUCCAcGCGGCGGUc -3' miRNA: 3'- uCCGCCG---CUuGCGc--AGGU-CGUUGCCG- -5' |
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7911 | 5' | -58.7 | NC_001973.1 | + | 16008 | 0.66 | 0.837166 |
Target: 5'- cGGaCGacCGAugGCG-CCAGCu-CGGCg -3' miRNA: 3'- uCC-GCc-GCUugCGCaGGUCGuuGCCG- -5' |
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7911 | 5' | -58.7 | NC_001973.1 | + | 34632 | 0.66 | 0.837166 |
Target: 5'- uGGGCuGGUaguaGAagcccgACGUGUgCGGCAGCGGg -3' miRNA: 3'- -UCCG-CCG----CU------UGCGCAgGUCGUUGCCg -5' |
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7911 | 5' | -58.7 | NC_001973.1 | + | 6420 | 0.66 | 0.837166 |
Target: 5'- cGGCGGCG-GCGCG-CCGaCgAGCGcGCc -3' miRNA: 3'- uCCGCCGCuUGCGCaGGUcG-UUGC-CG- -5' |
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7911 | 5' | -58.7 | NC_001973.1 | + | 13296 | 0.66 | 0.837166 |
Target: 5'- aAGGUGGUGGacuugucggaacGCGCgGUgCAGUAccCGGCg -3' miRNA: 3'- -UCCGCCGCU------------UGCG-CAgGUCGUu-GCCG- -5' |
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7911 | 5' | -58.7 | NC_001973.1 | + | 25807 | 0.66 | 0.837166 |
Target: 5'- cGGCGcGCGGcacaccacGCaaGCGUCCaccaugucGGCGcACGGCg -3' miRNA: 3'- uCCGC-CGCU--------UG--CGCAGG--------UCGU-UGCCG- -5' |
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7911 | 5' | -58.7 | NC_001973.1 | + | 102813 | 0.66 | 0.837166 |
Target: 5'- aAGGcCGGCGucauGGCGCG-CC-GCAACGacaGCa -3' miRNA: 3'- -UCC-GCCGC----UUGCGCaGGuCGUUGC---CG- -5' |
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7911 | 5' | -58.7 | NC_001973.1 | + | 28667 | 0.66 | 0.829061 |
Target: 5'- cGGCGuCGAGCGCGcugCCAaaguCGGCg -3' miRNA: 3'- uCCGCcGCUUGCGCa--GGUcguuGCCG- -5' |
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7911 | 5' | -58.7 | NC_001973.1 | + | 35048 | 0.66 | 0.829061 |
Target: 5'- gAGGCGGCGcaguuCGauuUCC-GCcGCGGCg -3' miRNA: 3'- -UCCGCCGCuu---GCgc-AGGuCGuUGCCG- -5' |
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7911 | 5' | -58.7 | NC_001973.1 | + | 39790 | 0.66 | 0.829061 |
Target: 5'- -cGCGGCGcGACuCGUCCaagaaucgGGCcACGGCc -3' miRNA: 3'- ucCGCCGC-UUGcGCAGG--------UCGuUGCCG- -5' |
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7911 | 5' | -58.7 | NC_001973.1 | + | 61822 | 0.66 | 0.829061 |
Target: 5'- uGGCGGcCGGgauguACGCGUaCAGCGAaugaaacaagUGGCc -3' miRNA: 3'- uCCGCC-GCU-----UGCGCAgGUCGUU----------GCCG- -5' |
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7911 | 5' | -58.7 | NC_001973.1 | + | 89624 | 0.66 | 0.829061 |
Target: 5'- cGuGCGGCuucGCGCGUugguuuuuuuUCAGCGuCGGCa -3' miRNA: 3'- uC-CGCCGcu-UGCGCA----------GGUCGUuGCCG- -5' |
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7911 | 5' | -58.7 | NC_001973.1 | + | 158689 | 0.66 | 0.829061 |
Target: 5'- cGGCGGcCGAGCGCGcgCCuacCGACGc- -3' miRNA: 3'- uCCGCC-GCUUGCGCa-GGuc-GUUGCcg -5' |
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7911 | 5' | -58.7 | NC_001973.1 | + | 21545 | 0.66 | 0.829061 |
Target: 5'- cGGCGuCGGGCGCG-CCguGGUccCGGCg -3' miRNA: 3'- uCCGCcGCUUGCGCaGG--UCGuuGCCG- -5' |
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7911 | 5' | -58.7 | NC_001973.1 | + | 69933 | 0.66 | 0.828241 |
Target: 5'- cGGCGcGUGAgcaggccccugccGCGCaugccGUCCAGUuuGAUGGCc -3' miRNA: 3'- uCCGC-CGCU-------------UGCG-----CAGGUCG--UUGCCG- -5' |
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7911 | 5' | -58.7 | NC_001973.1 | + | 87075 | 0.66 | 0.82742 |
Target: 5'- cGGCcGCGcAACGUGUgcuuucugccgugCCGGCAcgugugcgcgugcGCGGCg -3' miRNA: 3'- uCCGcCGC-UUGCGCA-------------GGUCGU-------------UGCCG- -5' |
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7911 | 5' | -58.7 | NC_001973.1 | + | 40126 | 0.66 | 0.820786 |
Target: 5'- gGGGUGGCGAcucguCGCGcCCaucgucucaaAGUucuCGGCg -3' miRNA: 3'- -UCCGCCGCUu----GCGCaGG----------UCGuu-GCCG- -5' |
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7911 | 5' | -58.7 | NC_001973.1 | + | 88961 | 0.66 | 0.820786 |
Target: 5'- cGGCaGUGccGCuCGUCCAGCAcgcagucgACGGCc -3' miRNA: 3'- uCCGcCGCu-UGcGCAGGUCGU--------UGCCG- -5' |
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7911 | 5' | -58.7 | NC_001973.1 | + | 75576 | 0.66 | 0.81995 |
Target: 5'- cGGGCGgaGCGGACggagcggGCGgagCgGGCGgaGCGGCa -3' miRNA: 3'- -UCCGC--CGCUUG-------CGCa--GgUCGU--UGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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