miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7959 5' -64.9 NC_001973.1 + 74530 0.66 0.558851
Target:  5'- -cCGCGUGCGagcCGCCCGCCacgcaccgcaaaUacauugugggaugcgCGGCGGCg -3'
miRNA:   3'- gaGCGCACGC---GCGGGUGG------------G---------------GCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 82252 0.66 0.555089
Target:  5'- -cCGUGUGCacgucGCGCa-GCCCCGGCa-- -3'
miRNA:   3'- gaGCGCACG-----CGCGggUGGGGCCGcug -5'
7959 5' -64.9 NC_001973.1 + 7932 0.66 0.545717
Target:  5'- -gCGUGUGCGCGgCCGgCgUGGUGcACg -3'
miRNA:   3'- gaGCGCACGCGCgGGUgGgGCCGC-UG- -5'
7959 5' -64.9 NC_001973.1 + 58005 0.66 0.539187
Target:  5'- cCUCuCcUGCGCGCCCacauugaACCgcucgaucucgggcuCCGGCGGCg -3'
miRNA:   3'- -GAGcGcACGCGCGGG-------UGG---------------GGCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 111930 0.66 0.536396
Target:  5'- -aCGUgGUGCGCGgCgGCgacuucuccgaCCCGGCGGCc -3'
miRNA:   3'- gaGCG-CACGCGCgGgUG-----------GGGCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 31352 0.66 0.536396
Target:  5'- -cCGCGcucUGCGUGgUCGCCgCGGCGGu -3'
miRNA:   3'- gaGCGC---ACGCGCgGGUGGgGCCGCUg -5'
7959 5' -64.9 NC_001973.1 + 81780 0.66 0.536396
Target:  5'- gUCGCGcucgGCGCgaaagugcacgGCCgcgguguccggCGCCgCCGGCGGCg -3'
miRNA:   3'- gAGCGCa---CGCG-----------CGG-----------GUGG-GGCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 137198 0.66 0.536396
Target:  5'- aCUCGCG-GCGCGagUCGCg-CGGCGGCg -3'
miRNA:   3'- -GAGCGCaCGCGCg-GGUGggGCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 81635 0.66 0.527132
Target:  5'- uCUUG-GUcGCGCGCgCCGCUUCGGcCGGCc -3'
miRNA:   3'- -GAGCgCA-CGCGCG-GGUGGGGCC-GCUG- -5'
7959 5' -64.9 NC_001973.1 + 16901 0.66 0.527132
Target:  5'- uUCGCGccgGCgGCGgCgGCCUcuCGGCGGCg -3'
miRNA:   3'- gAGCGCa--CG-CGCgGgUGGG--GCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 80160 0.66 0.527132
Target:  5'- aCUCGCGauaguaGCGCaGCaUCugCUCGGCGAg -3'
miRNA:   3'- -GAGCGCa-----CGCG-CG-GGugGGGCCGCUg -5'
7959 5' -64.9 NC_001973.1 + 118472 0.66 0.527132
Target:  5'- gUCGuCG-GCGCGuCCCAacuaCgUGGCGGCg -3'
miRNA:   3'- gAGC-GCaCGCGC-GGGUg---GgGCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 39421 0.66 0.527132
Target:  5'- -cCGCGgugagGCGCGUCgCGUCCagGGCGACg -3'
miRNA:   3'- gaGCGCa----CGCGCGG-GUGGGg-CCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 63832 0.66 0.517928
Target:  5'- -aCGaGUGCGCGUUCGCC--GGCGACu -3'
miRNA:   3'- gaGCgCACGCGCGGGUGGggCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 87115 0.66 0.517928
Target:  5'- -gCGCGUGCGCggcguGCgCGCgCCGGUG-Cg -3'
miRNA:   3'- gaGCGCACGCG-----CGgGUGgGGCCGCuG- -5'
7959 5' -64.9 NC_001973.1 + 108446 0.66 0.517928
Target:  5'- gCUCGC--GCGaCGCCCGCaCCGuGUGGCu -3'
miRNA:   3'- -GAGCGcaCGC-GCGGGUGgGGC-CGCUG- -5'
7959 5' -64.9 NC_001973.1 + 113205 0.66 0.517928
Target:  5'- -aCGCGUuccaCGCGUCCGCCgCGuaGACg -3'
miRNA:   3'- gaGCGCAc---GCGCGGGUGGgGCcgCUG- -5'
7959 5' -64.9 NC_001973.1 + 548 0.66 0.517928
Target:  5'- uUCGCGaaaacucGCGUcCCCGCCCa-GCGACg -3'
miRNA:   3'- gAGCGCa------CGCGcGGGUGGGgcCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 45227 0.66 0.517928
Target:  5'- -cCGCGUGCuGCcgGCCCGCCaCCuGGCu-- -3'
miRNA:   3'- gaGCGCACG-CG--CGGGUGG-GG-CCGcug -5'
7959 5' -64.9 NC_001973.1 + 5676 0.66 0.517928
Target:  5'- uUCGCGU-CGCuGCCCGCCCgCuuucGCGAg -3'
miRNA:   3'- gAGCGCAcGCG-CGGGUGGG-Gc---CGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.