Results 1 - 20 of 305 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8016 | 3' | -63.1 | NC_001973.1 | + | 108077 | 0.66 | 0.640808 |
Target: 5'- cUCGCuuAUCG-CGCC-CCGCGCgcaGCg -3' miRNA: 3'- cAGCGcgUAGCgGCGGuGGCGCGg--CG- -5' |
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8016 | 3' | -63.1 | NC_001973.1 | + | 23217 | 0.66 | 0.640808 |
Target: 5'- -gCGCGCAguggCGCaggGCC-UgGCGCUGCu -3' miRNA: 3'- caGCGCGUa---GCGg--CGGuGgCGCGGCG- -5' |
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8016 | 3' | -63.1 | NC_001973.1 | + | 85735 | 0.66 | 0.640808 |
Target: 5'- --gGCGUuggaguUgGUCGCCGCCGCGCUc- -3' miRNA: 3'- cagCGCGu-----AgCGGCGGUGGCGCGGcg -5' |
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8016 | 3' | -63.1 | NC_001973.1 | + | 50297 | 0.66 | 0.640808 |
Target: 5'- --gGCGC-UUGCCGuUCACCGUG-CGCu -3' miRNA: 3'- cagCGCGuAGCGGC-GGUGGCGCgGCG- -5' |
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8016 | 3' | -63.1 | NC_001973.1 | + | 91991 | 0.66 | 0.640808 |
Target: 5'- uGUCGUGUugCGCUuCCGCCaGCuugGCCGCa -3' miRNA: 3'- -CAGCGCGuaGCGGcGGUGG-CG---CGGCG- -5' |
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8016 | 3' | -63.1 | NC_001973.1 | + | 123238 | 0.66 | 0.640808 |
Target: 5'- cUCG-GCGUC-CCGCCGuuGCGUCa- -3' miRNA: 3'- cAGCgCGUAGcGGCGGUggCGCGGcg -5' |
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8016 | 3' | -63.1 | NC_001973.1 | + | 65564 | 0.66 | 0.640808 |
Target: 5'- cGUCGCGCG-CGCUGCgcgaGCuCGUcugGUCGCu -3' miRNA: 3'- -CAGCGCGUaGCGGCGg---UG-GCG---CGGCG- -5' |
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8016 | 3' | -63.1 | NC_001973.1 | + | 58441 | 0.66 | 0.639839 |
Target: 5'- cUCGC-CGUCGCCcugcguGCCcgaaauaGCCGC-CCGCu -3' miRNA: 3'- cAGCGcGUAGCGG------CGG-------UGGCGcGGCG- -5' |
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8016 | 3' | -63.1 | NC_001973.1 | + | 17418 | 0.66 | 0.639839 |
Target: 5'- gGUCGCgaaGCAgugagcgaacagcUCGuuGCCGCCGaacgGCgGCa -3' miRNA: 3'- -CAGCG---CGU-------------AGCggCGGUGGCg---CGgCG- -5' |
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8016 | 3' | -63.1 | NC_001973.1 | + | 83690 | 0.66 | 0.634991 |
Target: 5'- cUCGCGCAgagUCGCgaccaaaguuuggaGCUcgauagagaGCgGCGCCGCg -3' miRNA: 3'- cAGCGCGU---AGCGg-------------CGG---------UGgCGCGGCG- -5' |
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8016 | 3' | -63.1 | NC_001973.1 | + | 24311 | 0.66 | 0.631112 |
Target: 5'- -gCGCGCGUCGaCGCCGaagagGUGCUGUu -3' miRNA: 3'- caGCGCGUAGCgGCGGUgg---CGCGGCG- -5' |
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8016 | 3' | -63.1 | NC_001973.1 | + | 59068 | 0.66 | 0.631112 |
Target: 5'- -gUGCGCAacgugUGCCGCU-UCGUGCUGCc -3' miRNA: 3'- caGCGCGUa----GCGGCGGuGGCGCGGCG- -5' |
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8016 | 3' | -63.1 | NC_001973.1 | + | 62712 | 0.66 | 0.631112 |
Target: 5'- cGUCGCGaaaaacUUGCCcaaGUCGCCGCGCguCGUg -3' miRNA: 3'- -CAGCGCgu----AGCGG---CGGUGGCGCG--GCG- -5' |
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8016 | 3' | -63.1 | NC_001973.1 | + | 27306 | 0.66 | 0.627234 |
Target: 5'- cUUGCGCAggaUCGUCGacuuggucaggcaCGCCaCGCCGCu -3' miRNA: 3'- cAGCGCGU---AGCGGCg------------GUGGcGCGGCG- -5' |
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8016 | 3' | -63.1 | NC_001973.1 | + | 98267 | 0.66 | 0.621417 |
Target: 5'- gGUCGCGU-UCGCucCGCaCugUGCGCUGg -3' miRNA: 3'- -CAGCGCGuAGCG--GCG-GugGCGCGGCg -5' |
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8016 | 3' | -63.1 | NC_001973.1 | + | 96614 | 0.66 | 0.621417 |
Target: 5'- -aCGCGCAcggcuaccugUCGCgGCCGgcggCGCGCCa- -3' miRNA: 3'- caGCGCGU----------AGCGgCGGUg---GCGCGGcg -5' |
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8016 | 3' | -63.1 | NC_001973.1 | + | 82799 | 0.66 | 0.621417 |
Target: 5'- --gGCGCugaUGCCGCCcaACgGCGCCcaGCa -3' miRNA: 3'- cagCGCGua-GCGGCGG--UGgCGCGG--CG- -5' |
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8016 | 3' | -63.1 | NC_001973.1 | + | 82497 | 0.66 | 0.621417 |
Target: 5'- -aCGCGCGccUUGCCGgCGUCGCgGCCGg -3' miRNA: 3'- caGCGCGU--AGCGGCgGUGGCG-CGGCg -5' |
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8016 | 3' | -63.1 | NC_001973.1 | + | 68002 | 0.66 | 0.621417 |
Target: 5'- --aGCGCGUCGagguugucgagaCUGgCGcCCGCGUCGCg -3' miRNA: 3'- cagCGCGUAGC------------GGCgGU-GGCGCGGCG- -5' |
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8016 | 3' | -63.1 | NC_001973.1 | + | 7100 | 0.66 | 0.621417 |
Target: 5'- -gCGCGCG-CGaCCGCCGUCGUGCuCGa -3' miRNA: 3'- caGCGCGUaGC-GGCGGUGGCGCG-GCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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