miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8039 3' -53.6 NC_001973.1 + 21156 0.66 0.976466
Target:  5'- cGCUcGAGCUCGGcgGACgCguaggauuuuacgcgUCGGCCGGg -3'
miRNA:   3'- -CGAaCUUGAGCUaaCUG-G---------------GGCCGGCU- -5'
8039 3' -53.6 NC_001973.1 + 18331 0.66 0.975464
Target:  5'- uCUUGG--UCGGaUGGCCgCCGGCCa- -3'
miRNA:   3'- cGAACUugAGCUaACUGG-GGCCGGcu -5'
8039 3' -53.6 NC_001973.1 + 151138 0.66 0.966935
Target:  5'- gGCcaGAGC-CGAUgacaucauGCCUCGGCCGAa -3'
miRNA:   3'- -CGaaCUUGaGCUAac------UGGGGCCGGCU- -5'
8039 3' -53.6 NC_001973.1 + 62917 0.66 0.966935
Target:  5'- aGCacGAGCgcCGAUUcGACUCgGGCCGGc -3'
miRNA:   3'- -CGaaCUUGa-GCUAA-CUGGGgCCGGCU- -5'
8039 3' -53.6 NC_001973.1 + 42148 0.66 0.963676
Target:  5'- cGCgacUGuuACUCGAguugUGGCCgCCGGUgGAu -3'
miRNA:   3'- -CGa--ACu-UGAGCUa---ACUGG-GGCCGgCU- -5'
8039 3' -53.6 NC_001973.1 + 115061 0.66 0.963676
Target:  5'- ---cGAGCUCGAgcaaacccGAUUCCGGCCu- -3'
miRNA:   3'- cgaaCUUGAGCUaa------CUGGGGCCGGcu -5'
8039 3' -53.6 NC_001973.1 + 108939 0.66 0.963676
Target:  5'- uGCUcgcGAACUCGAgcaaggcgcACCCgGGCCGc -3'
miRNA:   3'- -CGAa--CUUGAGCUaac------UGGGgCCGGCu -5'
8039 3' -53.6 NC_001973.1 + 2673 0.67 0.960199
Target:  5'- cGCccGAGCUCGAg----CUCGGCCGAc -3'
miRNA:   3'- -CGaaCUUGAGCUaacugGGGCCGGCU- -5'
8039 3' -53.6 NC_001973.1 + 58023 0.67 0.956499
Target:  5'- -aUUGAaccGCUCGAUcucgGGCUCCGGCgGc -3'
miRNA:   3'- cgAACU---UGAGCUAa---CUGGGGCCGgCu -5'
8039 3' -53.6 NC_001973.1 + 133262 0.67 0.952571
Target:  5'- gGCguccAGCUCGGccucGGCCgCGGCCGAg -3'
miRNA:   3'- -CGaac-UUGAGCUaa--CUGGgGCCGGCU- -5'
8039 3' -53.6 NC_001973.1 + 67784 0.67 0.947983
Target:  5'- gGCUguUGAACUUGAcggagaaUUGGCCggUGGCCGGg -3'
miRNA:   3'- -CGA--ACUUGAGCU-------AACUGGg-GCCGGCU- -5'
8039 3' -53.6 NC_001973.1 + 75008 0.67 0.944018
Target:  5'- cGCUucaUGuACUCGAgcgUGACCUucacgcggCGGUCGAa -3'
miRNA:   3'- -CGA---ACuUGAGCUa--ACUGGG--------GCCGGCU- -5'
8039 3' -53.6 NC_001973.1 + 72207 0.68 0.936493
Target:  5'- -gUUGAGCUCGGcgGACgCguaagauuuuacgugCCGGCCGGg -3'
miRNA:   3'- cgAACUUGAGCUaaCUG-G---------------GGCCGGCU- -5'
8039 3' -53.6 NC_001973.1 + 55912 0.68 0.924051
Target:  5'- gGCUcGGGCUCGGgcucgGGCUCgGGCuCGAg -3'
miRNA:   3'- -CGAaCUUGAGCUaa---CUGGGgCCG-GCU- -5'
8039 3' -53.6 NC_001973.1 + 16435 0.69 0.896334
Target:  5'- cGCUcGAGCUCGGcgGACgCguaagauuuuacgugCCGGCCGGg -3'
miRNA:   3'- -CGAaCUUGAGCUaaCUG-G---------------GGCCGGCU- -5'
8039 3' -53.6 NC_001973.1 + 12423 0.7 0.868236
Target:  5'- aCUUGAGCUCGGcUGACgCguaggauuuuacgcgUCGGCCGGg -3'
miRNA:   3'- cGAACUUGAGCUaACUG-G---------------GGCCGGCU- -5'
8039 3' -53.6 NC_001973.1 + 126089 0.7 0.850507
Target:  5'- -gUUGAGCcCGAgagcgugccgacgcgUGAgCCCGGCCGGg -3'
miRNA:   3'- cgAACUUGaGCUa--------------ACUgGGGCCGGCU- -5'
8039 3' -53.6 NC_001973.1 + 128557 0.72 0.780266
Target:  5'- uGCUUGAAC-CGcUUGGCCgCCGGCa-- -3'
miRNA:   3'- -CGAACUUGaGCuAACUGG-GGCCGgcu -5'
8039 3' -53.6 NC_001973.1 + 114875 0.76 0.529157
Target:  5'- gGCUUGAACUCuGUUaACCCCuGCCGGc -3'
miRNA:   3'- -CGAACUUGAGcUAAcUGGGGcCGGCU- -5'
8039 3' -53.6 NC_001973.1 + 115031 0.77 0.519276
Target:  5'- gGUUUGAACcCGAUcGACCCCGGCg-- -3'
miRNA:   3'- -CGAACUUGaGCUAaCUGGGGCCGgcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.